PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV26027.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 250aa    MW: 26922 Da    PI: 6.9824
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV26027.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011101123123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+ksF++   L  H ++H
  KZV26027.1 101 YQCKTCNKSFPSFQALGGHRSSH 123
                 9***********99999999988 PP
2zf-C2H211.90.00072163185123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ Cg  F++   L  H+r+H
  KZV26027.1 163 HECSLCGAEFTSGQALGGHMRRH 185
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.73E-9100123No hitNo description
PfamPF139124.7E-12101125IPR007087Zinc finger, C2H2
SMARTSM003550.022101123IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.118101130IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
SuperFamilySSF576672.73E-9158185No hitNo description
PfamPF139123.2E-12163187IPR007087Zinc finger, C2H2
SMARTSM003550.018163185IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764163185IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MQGEEEAVIM IKGKRSKRPR PSSPLGLAIL ATSSSSTTDR HGGGGSVSVE FSGCSAYSGD  60
QLTPSSADEE DEDLAHCLIL LSGGGQSRES SQPRVAVAEL YQCKTCNKSF PSFQALGGHR  120
SSHKKTSNKP MIFIDEKPPS ISRNKQESSL SAFDTGSSKC RIHECSLCGA EFTSGQALGG  180
HMRRHRPIPQ PASSSHGESQ EVKRPRNLLS LDLNLPAQED IDRAEQSSFP LASKEEVIVF  240
SNSSLIDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11620KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV26027.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077299.18e-87zinc finger protein ZAT5
TrEMBLA0A2Z7B3A60.0A0A2Z7B3A6_9LAMI; Nucleic acid binding protein
STRINGXP_006493540.12e-62(Citrus sinensis)
STRINGXP_006428462.11e-62(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.19e-51C2H2 family protein