PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV26153.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NF-YB
Protein Properties Length: 209aa    MW: 22904.5 Da    PI: 6.1255
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV26153.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB85.75.2e-273583149
       NF-YB  1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse 49
                vreqdrflPian+srimkk+lPan+k++kdaketvqecvsefisfvtse
  KZV26153.1 35 VREQDRFLPIANISRIMKKALPANGKVAKDAKETVQECVSEFISFVTSE 83
                69**********************************************9 PP
2NF-YB76.34.6e-241131594995
       NF-YB  49 easdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                  asdkcqrekrktingddllwa+atlGfedy++plk+yl++yre ++
  KZV26153.1 113 RASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKMYLARYREGDT 159
                 69*****************************************9665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.6E-4730170IPR009072Histone-fold
SuperFamilySSF471137.62E-163883IPR009072Histone-fold
PfamPF008084.2E-164183IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.5E-176987No hitNo description
PfamPF008081.7E-4112135IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.83E-16113196IPR009072Histone-fold
PRINTSPR006155.5E-17118136No hitNo description
PRINTSPR006155.5E-17137155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MADGRPVGSS VQIPPGSPVG GSHDSGGDQS PRSGVREQDR FLPIANISRI MKKALPANGK  60
VAKDAKETVQ ECVSEFISFV TSEYGSFSFV NHVYVVSFAV ELEFQLRDYD FERASDKCQR  120
EKRKTINGDD LLWAMATLGF EDYIDPLKMY LARYREGDTK GSAKSADVSA RKDGLQSTSS  180
SQLVNQGSYS QGMNYGHSQV HFTPAGVDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A3e-4036156393NF-YB
4awl_B3e-4036156494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4036156494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4g91_B3e-4035156192Transcription factor HapC (Eurofung)
4g92_B3e-4035156192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV26153.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094723.14e-90nuclear transcription factor Y subunit B-8
SwissprotQ8VYK47e-71NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A2Z7AXF91e-154A0A2Z7AXF9_9LAMI; Nuclear transcription factor Y subunit B-10-like
STRINGXP_009620316.12e-88(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.33e-73nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]