PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV26552.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 243aa    MW: 27794.4 Da    PI: 5.4693
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV26552.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.6e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++lv  +++ G  +W++ +++ g+ R++k+c++rw +yl
       KZV26552.1 14 KGPWSPEEDQILVSFIQKNGHANWRALPKEAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.35.4e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T eE+e +++++++lG++ W++Ia++++ gRt++++k+ w++
       KZV26552.1  67 RGNFTIEEEETIINLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHT 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-23564IPR009057Homeodomain-like
PROSITE profilePS5129415.969961IPR017930Myb domain
SuperFamilySSF466894.9E-3010108IPR009057Homeodomain-like
SMARTSM007176.5E-131363IPR001005SANT/Myb domain
PfamPF002493.7E-151461IPR001005SANT/Myb domain
CDDcd001677.61E-101661No hitNo description
PROSITE profilePS5129424.81462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2565117IPR009057Homeodomain-like
SMARTSM007173.0E-1266114IPR001005SANT/Myb domain
PfamPF002499.6E-1567111IPR001005SANT/Myb domain
CDDcd001678.33E-969110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVRAPCCEKM GLKKGPWSPE EDQILVSFIQ KNGHANWRAL PKEAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TIEEEETIIN LHEMLGNRWS AIAARLPGRT DNEIKNVWHT QLKKRLKNNE  120
GSGDPSRRSL INMKFMENKN SDPVTGGTSP HQCSSEMSSV TDSSTGKEKM VFVKDEGIDY  180
SSEYFPRIDE TFWSEELSTD EVECPSPLNP IRCVEIGSRF DDSMDFWCNL LSRDAGIQDL  240
PEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV26552.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091315.11e-112myb-related protein Myb4
SwissprotQ9SJX81e-80MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A2Z7B4W20.0A0A2Z7B4W2_9LAMI; Myb-related protein Myb4
STRINGXP_009629052.13e-97(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-74myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]