PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV27628.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family WRKY
Protein Properties Length: 244aa    MW: 27697.1 Da    PI: 5.2365
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV27628.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.48.3e-30118174258
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                 dDgy+WrKYGqK++k++++prsYYrC+ ++C++kk+ve s edp+ +++tYeg H h
  KZV27628.1 118 DDGYKWRKYGQKSIKNTPNPRSYYRCANPRCNAKKRVELSMEDPDSIIVTYEGLHVH 174
                 8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-28112174IPR003657WRKY domain
PROSITE profilePS5081125.844112174IPR003657WRKY domain
SuperFamilySSF1182902.48E-25114174IPR003657WRKY domain
SMARTSM007743.1E-32117176IPR003657WRKY domain
PfamPF031066.1E-24118174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDEVKKLTEG SEDELVNELL DNESPFIFLR SNDDHGSETK PFPWMDPHLV STLYSGPTIE  60
EVESSLSDMN RGVRSFQPED RSLEACRILD IGGIRSSGYN GKNKYSLIIK NHGNALTDDG  120
YKWRKYGQKS IKNTPNPRSY YRCANPRCNA KKRVELSMED PDSIIVTYEG LHVHLDYPFS  180
IPSTKKRKRP VPEAQNQAHD DGPKIFSLGA TIDPVKELEV EEELIGSRGL LEDIVPFIVR  240
NPIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-191161781677Probable WRKY transcription factor 4
2lex_A2e-191161781677Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV27628.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094877.14e-68probable WRKY transcription factor 49
TrEMBLA0A2Z7B2F11e-180A0A2Z7B2F1_9LAMI; Putative WRKY transcription factor 49-like
STRINGVIT_08s0007g00570.t012e-62(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120752124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.13e-39WRKY DNA-binding protein 49