PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV27876.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family WRKY
Protein Properties Length: 669aa    MW: 73583.9 Da    PI: 8.5407
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV27876.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.1e-32340397159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kk+vers   ++++ei+Y+g+H+h 
  KZV27876.1 340 LDDGYNWRKYGQKSVKGSENPRSYYKCTHPSCPTKKQVERSL-SGQITEIVYKGSHTHA 397
                 59****************************************.9**************7 PP
2WRKY105.92.1e-33518574359
                 -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 Dgy+WrKYGqK+vkg+++prsYY+Cts++Cpv+k+ver+++dpk v++tYeg+Hnh+
  KZV27876.1 518 DGYRWRKYGQKVVKGNPNPRSYYKCTSPQCPVRKHVERASHDPKSVITTYEGRHNHD 574
                 9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF549285.74E-12254IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3302.5E-8447IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3302.0E-9102174IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549285.74E-12109146IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd122471.10E-16110147No hitNo description
Gene3DG3DSA:2.20.25.808.7E-28329399IPR003657WRKY domain
SuperFamilySSF1182906.41E-25334399IPR003657WRKY domain
PROSITE profilePS5081123.801335399IPR003657WRKY domain
SMARTSM007741.1E-35340398IPR003657WRKY domain
PfamPF031069.1E-25341396IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-36501576IPR003657WRKY domain
SuperFamilySSF1182903.01E-28508576IPR003657WRKY domain
PROSITE profilePS5081137.08511576IPR003657WRKY domain
SMARTSM007744.1E-38516575IPR003657WRKY domain
PfamPF031061.7E-25518574IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MKTSKLQGQA WIVFSEVAAA SNALRQMHNF PFYDKPIRIQ YAKTKSDCIA KAEGTYDKKK  60
KQEERAERKR KVEEGHQTAN ANGIRSESNG GAAATSREGK PVTQETATEP NHILFIQNLP  120
YETNIMMLEL LFKQYPGFRE VRMVEAKPGS LESTVNPGLC SVVMTSPNSF TTLLAPDHHH  180
HPTTGTALHG EVEGRKGPGV PKFKAVPPPS LPISPPSAAS PFSYFGLSPA EFLDSPVLLS  240
SSNILPSPTT GTFPSSNWKG DSNTIYQKDI KPDQKSYSDF SFQPDTVSTV FPTGEYYQEP  300
AKQDNLPPEK NFLNSEFNPN QQIDQYNESS VCSVAENKRL DDGYNWRKYG QKSVKGSENP  360
RSYYKCTHPS CPTKKQVERS LSGQITEIVY KGSHTHAKPQ TVRRSSATVS ASSTVSASSV  420
VIQSQKEIRE QLSDGSVDIR KMDSSVATPP ENSSVSVGDD EFDYRSKFGG DDFDEDGPDT  480
KRWKCENGSE NAGGMGCKTV REPRVVVQTK SDIDILIDGY RWRKYGQKVV KGNPNPRSYY  540
KCTSPQCPVR KHVERASHDP KSVITTYEGR HNHDVPAPRG AGNHSLTQPV PYKPSNNAAM  600
AGALPVRGGP VEAQAFTLEM LPSPAGSFRY SGFGNTVGSG IDLSQGNALF SRAKDEPGDY  660
SFLDSSLYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-35329577678Probable WRKY transcription factor 4
2lex_A7e-35329577678Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV27876.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080757.11e-163probable WRKY transcription factor 25
SwissprotQ6IEQ71e-110WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A2Z7B2E60.0A0A2Z7B2E6_9LAMI; Uncharacterized protein
STRINGEOY346311e-147(Theobroma cacao)
STRINGGLYMA14G38010.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-95WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]