PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV28134.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 316aa    MW: 35627.7 Da    PI: 6.5042
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV28134.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv ++++ G g+W+++++  g+ R+ k+c++rw +yl
       KZV28134.1 14 KGPWTPEEDIILVSYIQEQGAGNWRSVPSNTGLLRCSKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.64.3e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E++ ++++ ++lG++ W++Ia++++ +Rt++++k++w+++l
       KZV28134.1  67 RGNFTEHEEKMIIHLQELLGNR-WAAIASYLP-HRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.547961IPR017930Myb domain
SuperFamilySSF466893.34E-3011108IPR009057Homeodomain-like
SMARTSM007176.3E-131363IPR001005SANT/Myb domain
PfamPF002491.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-221568IPR009057Homeodomain-like
CDDcd001671.14E-91661No hitNo description
PROSITE profilePS5129424.64362116IPR017930Myb domain
SMARTSM007174.3E-1766114IPR001005SANT/Myb domain
PfamPF002491.6E-1467112IPR001005SANT/Myb domain
CDDcd001674.33E-1169110No hitNo description
Gene3DG3DSA:1.10.10.608.7E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRPPCCDTV GVKKGPWTPE EDIILVSYIQ EQGAGNWRSV PSNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TEHEEKMIIH LQELLGNRWA AIASYLPHRT DNDIKNYWNT HLKKKLHKQK  120
GQEDLSTHDH SSTISKGQWE KRLQTDIHMA KQALCEALCI EKSDPKTPPD SEIYSVTSQC  180
KTVPSSTYAS SAENIARLLE NWTKKSPNSC QAGVNESNHS ASLNNHHLSM GSSSSPSEGT  240
ICTRLLSFNS SNYSDISQSE EDAKFDAANF TPQTHEQETQ MPFTMLEKWL FDDAAPHGQE  300
GDFMDLALEE TTVHLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV28134.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071639.11e-141myb-related protein 306
SwissprotP813921e-131MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2Z7B2X10.0A0A2Z7B2X1_9LAMI; Uncharacterized protein
STRINGMigut.I00176.1.p1e-132(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-99myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]