PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV28432.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

G2-like

Protein Properties

Length: 407aa MW: 45364.7 Da PI: 8.7674

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV28432.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.2	1.8e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG+ekAtPk++l+lm+++gLtl+h+kSHLQkYRl KZV28432.1 46 KPRLKWTPDLHERFIEAVNQLGGAEKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.952	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-31	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-16	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-23	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-10	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	2.4E-23	143	189	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MYRQHHNQGK IIQPSSRVSI PAERHLFLHG TNGAGDSGLV LSTDAKPRLK WTPDLHERFI 60 EAVNQLGGAE KATPKSVLKL MGIQGLTLYH LKSHLQKYRL SKNLHGQANS GNSKTATGER 120 INEASGTHIS NHNTETQPTK NLHLGEAIQM QIEVQRRLHE QLEVQRHLQL RIEAQGKYLQ 180 AVLEKAQETL GKQNVGTISL EAAKVHLSDL VSKVSTQCLD SVFPGVKELS NSCLQQTQTT 240 QPADCSIESC LTSCDGSVRD QEMYNMPLGL SPIKFRAQRE SRDNDNERRK TENRWHEDIK 300 DSRGFFSRAN DNAFVSETKS SNLSMSIGQE GSKWNGSGNY LEDSYKGAET NINFFNKNTD 360 TNGLIKSQNN KKPPESKLPL FSTKLDLNTD GGVSNCKQLD LNGFSWG

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MYRQHHNQGK IIQPSSRVSI PAERHLFLHG TNGAGDSGLV LSTDAKPRLK WTPDLHERFI  60
EAVNQLGGAE KATPKSVLKL MGIQGLTLYH LKSHLQKYRL SKNLHGQANS GNSKTATGER  120
INEASGTHIS NHNTETQPTK NLHLGEAIQM QIEVQRRLHE QLEVQRHLQL RIEAQGKYLQ  180
AVLEKAQETL GKQNVGTISL EAAKVHLSDL VSKVSTQCLD SVFPGVKELS NSCLQQTQTT  240
QPADCSIESC LTSCDGSVRD QEMYNMPLGL SPIKFRAQRE SRDNDNERRK TENRWHEDIK  300
DSRGFFSRAN DNAFVSETKS SNLSMSIGQE GSKWNGSGNY LEDSYKGAET NINFFNKNTD  360
TNGLIKSQNN KKPPESKLPL FSTKLDLNTD GGVSNCKQLD LNGFSWG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-22	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-22	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-22	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-22	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV28432.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077862.1	0.0	myb-related protein 2 isoform X1
Swissprot	Q9SQQ9	1e-120	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A2Z7B2B1	0.0	A0A2Z7B2B1_9LAMI; Transcription factor
STRING	XP_002525443.1	1e-168	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2946	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-122	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]