PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV28453.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family Trihelix
Protein Properties Length: 498aa    MW: 54396.4 Da    PI: 7.4631
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV28453.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.34.1e-1891177186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++  + +L+ea++e+  +l+rg+l++ +Weev++++  r ++ +++ +qCk+k +nl+kryk ++++ ++    s+s++p+++q+e
  KZV28453.1  91 EWSDTAIACLLEAYSEKFVQLNRGNLRGRDWEEVAAVVseRCEKQTKTVEQCKNKVDNLKKRYKLERHRLSNA-GVSVSHWPWLKQME 177
                 5*************************************766778899************************96.77888********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-2089179No hitNo description
HamapMF_01220_B32.147229492IPR015963Uridylate kinase, bacteria
CDDcd042544.29E-111232492No hitNo description
Gene3DG3DSA:3.40.1160.107.0E-63281492IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536332.49E-49284491IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006969.4E-19288471IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MASCDDDFSI LDDHQNPNSV QPSATVTAQT PPFNISPYEH DSDPFDSEPD PNSISGKRIA  60
DREDIHGVTS KRTRSHSSAS AAGDYRKDRE EWSDTAIACL LEAYSEKFVQ LNRGNLRGRD  120
WEEVAAVVSE RCEKQTKTVE QCKNKVDNLK KRYKLERHRL SNAGVSVSHW PWLKQMEQIV  180
GNSLAAKAAA EEEKSPGGSS YSIRSKRLGT SSSSPGGQVT SMKPKSSTLR WRRVVFKVSG  240
AALAGYMKGD CSCEGPCSDV FVYFHDLIGH QGKKAYLMNK RQVAMLISRE VSIACRVGVE  300
VAIVVGGRNF FCGDTWVTST GLDRCTAYQI GMMATVMNSI LLQSALEKLG VQTRVQSAFS  360
MPEVAEPYSR QRAIRHLEKG RVVIFGGIGA GTGNPLFSTD TAAALRASEI HADAVLKGTN  420
VDGVYICDSR NESIAAEHMS FRDLASRGAS PMDMMAMTFC EENMIPVVVF NLHEPGNISR  480
ALCGEQVGTL ISQTGPIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A1e-5428749277280Uridylate kinase
3nwy_B1e-5428749277280Uridylate kinase
3nwy_C1e-5428749277280Uridylate kinase
3nwy_D1e-5428749277280Uridylate kinase
3nwy_E1e-5428749277280Uridylate kinase
3nwy_F1e-5428749277280Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV28453.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101478.10.0uncharacterized protein LOC105179524
TrEMBLA0A2Z7B3L80.0A0A2Z7B3L8_9LAMI; Uncharacterized protein
STRINGMigut.L01743.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein