PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV28454.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family Trihelix
Protein Properties Length: 480aa    MW: 54948.8 Da    PI: 6.2778
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV28454.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.21e-23109208186
    trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                 +Wt+++v++Li ++ +++++++++              +kk++W++vs++++ergf +sp+qC++k+++lnkryk+++e+ +k+ +++++++ +++d +
  KZV28454.1 109 KWTDDMVRLLIVVVFYIGDEVGSEGndpankkksgvilQKKGKWKSVSRALMERGFYVSPQQCEDKFNDLNKRYKRVNEILGKGtACQVVENQSLLDTM 207
                 7**************99999996433667788899999**********************************************55************9 PP

    trihelix  86 e 86 
                 +
  KZV28454.1 208 D 208
                 8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-20107234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MESNIMSGGM RPNRNPDVLG LEMSLHHHIP PPQNPPLLPQ QQQLPMMSYG HIEGDHHPQT  60
QKSLKQGYTF SVKSKSQTLT LSDDDEPGLA AENSADDGKK KTSPWHRMKW TDDMVRLLIV  120
VVFYIGDEVG SEGNDPANKK KSGVILQKKG KWKSVSRALM ERGFYVSPQQ CEDKFNDLNK  180
RYKRVNEILG KGTACQVVEN QSLLDTMDHL SSKMKDEVKK LLSSKHLFFR EMCAYHNTCG  240
HGGATATVEG VVQYSPLEVA AEPPQGLAQY QQQRCFHSPE SIPVMPNINR GETIEGSKLV  300
KGICVEDNYD DEDEEDEDDD ESDDVIGGGS RCHDQAHDDD INEMDERSSR KRDREWACPS  360
SPLIRQLEAE LINILQDGMR SSFEKRQWLR TKLMQLDEQS VGIQYQSLAL EKQRLKWLKF  420
STKKEREIER EKLLNERMKL ENERMVLLIR QKEHDFLDHH RQIPQQASNK KNGDPSSVSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV28454.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094441.10.0uncharacterized protein LOC105174138
TrEMBLA0A2Z7B9K10.0A0A2Z7B9K1_9LAMI; Uncharacterized protein
STRINGXP_006481921.11e-159(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-73sequence-specific DNA binding transcription factors