PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV28481.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

TCP

Protein Properties

Length: 151aa MW: 16199.4 Da PI: 11.955

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV28481.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.3	1.9e-36	54	126	5	77
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaes 77 ++++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt++ +a+++++ + KZV28481.1 54 SSSNKDRHTKVNGRGRRVRMPALCAARVFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAEAVSTTT 126 6789*********************************************************999996652222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.6E-31	56	126	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.845	57	111	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MTSSHMVLRQ VSHSDSPPPL STTAVHVLPP PSAASAMESK SKIGALSKRV STGSSSNKDR 60 HTKVNGRGRR VRMPALCAAR VFQLTRELGH RSDGETIEWL LRQAEPSIIA ATGTGTVPAE 120 AVSTTTGTLP ASRSTDSTHG RLPRWRILWT P

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV28481.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077331.1	2e-45	transcription factor TCP11
Swissprot	O23875	4e-37	PCF1_ORYSJ; Transcription factor PCF1
Swissprot	O64647	1e-35	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A2Z7B2B8	1e-103	A0A2Z7B2B8_9LAMI; Uncharacterized protein
STRING	XP_002519510.1	4e-43	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	5e-38	TCP family protein