PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV28554.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family Dof
Protein Properties Length: 512aa    MW: 56125.2 Da    PI: 5.6206
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV28554.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.63.1e-39143203262
      zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                 ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk++ 
  KZV28554.1 143 PDKILPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCHRYWTAGGTMRNVPIGAGRRKNKNTV 203
                 7899******************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-30136200IPR003851Zinc finger, Dof-type
PfamPF027011.4E-31145201IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.723147201IPR003851Zinc finger, Dof-type
PROSITE patternPS013610149185IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MFVERDPKIK LFGKTIELQE AAAAAPAVTS LPVPTQCSVA AEEDGSHHDP PCSSDSMLED  60
RNLDLDAEEQ ESTKSLSDTI QDAAKKGGLG QPTMEEEFRD SNRIPEDSTT PSADDRAVAN  120
KTSKTEEDQN GAGNSQDRTL KKPDKILPCP RCNSMDTKFC YFNNYNVNQP RHFCKNCHRY  180
WTAGGTMRNV PIGAGRRKNK NTVSQFRHLT VREALQSAQV DIPNVIHPAA LNPNNSTVLT  240
FNSDTPLCES MASALNIADE SIINSRRNGF HRTEANISVS HGSKVNRDDP QFRTFTSTAS  300
STSDKCKSVL PESTSNFPPV PPRVPCFPGA PWHFPWHSDP WSTPMSPPTV SPATFPVPFF  360
STTLPYWGCA VPGAWNVPWV FPQMPTAIQC DKPQSSSDPN SPTLGKHSRD ENLLKSPNGN  420
EAEPQKESSS EKSLWIPKTL RIDDPEEAAK SSIWETLGIK HDSVDSLGGA DLFKPFQSQS  480
NSDEKSSVLE TSSVLHANPA ALSRALSFQE SS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV28554.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098639.10.0cyclic dof factor 2-like
TrEMBLA0A2Z7B9T40.0A0A2Z7B9T4_9LAMI; Zinc finger protein
STRINGVIT_14s0108g00980.t011e-171(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53224122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-94cycling DOF factor 2