PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV28741.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NAC
Protein Properties Length: 228aa    MW: 25267.8 Da    PI: 9.5097
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV28741.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.82.7e-33151361128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrF+Ptd+e+v +yL++k+ + +l++ ++i+e+ i ++ Pw++p  +  +++e yfF+++++ y + +r+   t++g+W+a g  k+++s+ +  
  KZV28741.1  15 LPPGFRFQPTDKEIVFQYLARKIFSYPLPA-SIIPEITISSSGPWSFP--TGDSDQERYFFINKAN-YGNRERAVIPTRAGFWRAMGPGKRIVSSkTMP 109
                 79****************************.89***************..5567899*****9866.8888899999***********99999973445 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 lvg+k+tLvfy+g  p+ ++tdW+mhey +
  KZV28741.1 110 LVGIKRTLVFYEG--PN-TRTDWIMHEYCV 136
                 6**********65..44.57********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-3613171IPR003441NAC domain
PROSITE profilePS5100539.31115171IPR003441NAC domain
PfamPF023652.0E-2016135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MEKFSFIKDG VTSKLPPGFR FQPTDKEIVF QYLARKIFSY PLPASIIPEI TISSSGPWSF  60
PTGDSDQERY FFINKANYGN RERAVIPTRA GFWRAMGPGK RIVSSKTMPL VGIKRTLVFY  120
EGPNTRTDWI MHEYCVTALT TAACTIQQKK KISPGSLVPI GNWVLCHLFM KKTSEYKGRI  180
EQSAGLGSYS SSSSTSSASN SSMDSDSSSI ITEVSSDIVP DDESVARI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-241517717171NO APICAL MERISTEM PROTEIN
1ut4_B7e-241517717171NO APICAL MERISTEM PROTEIN
1ut7_A7e-241517717171NO APICAL MERISTEM PROTEIN
1ut7_B7e-241517717171NO APICAL MERISTEM PROTEIN
4dul_A7e-241517717171NAC domain-containing protein 19
4dul_B7e-241517717171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV28741.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073111.11e-66NAC domain-containing protein 83
TrEMBLA0A2Z7B2Z81e-167A0A2Z7B2Z8_9LAMI; NAC transcription factor 25-like
STRINGPGSC0003DMT4000110697e-62(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-47NAC domain containing protein 83