PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV28960.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HSF
Protein Properties Length: 503aa    MW: 55836.3 Da    PI: 4.5863
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV28960.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.3e-36131042102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d+++++++sws+++nsfvv+d+ efak +Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+ i 
    KZV28960.1  13 FLAKTYDMVDDPSTDKIVSWSDTNNSFVVWDSAEFAKVLLPKHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKGIS 100
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    KZV28960.1 101 RRKP 104
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-39696IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.6E-639102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.89E-369102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-3113102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-201336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-205163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
PAPMTSMNAP PPFLAKTYDM VDDPSTDKIV SWSDTNNSFV VWDSAEFAKV LLPKHFKHNN  60
FSSFVRQLNT YGFRKVDPDR WEFANEGFLR GQKHLLKGIS RRKPAHGQTQ QQQQSIGQSS  120
SVGACVEVGK FGLEEEVERL KRDKNVLMQE LVRLRQQQQT TDGQLQTTAK RLQGMEQRQQ  180
QMMAFLAKAV NSPGFLAQFM HQQNDSSRLV TEGNKKRRLK PDDVSDGSSV GSSFDGQIIK  240
YQPLINEAAK AMLKQIMKMD SSHRLETFSN DSDSFLIDDG SLPSDGVVST NSPNWVSRVT  300
LREVPSTSEL RFMQSGSPDE SFSSGAAPEV QSASLGLPAE IVGVGVQVPP IIPPLNDTGM  360
LEFSEVIPES DASVVEMETD TGNFIHPSNK ICIPSTGFSS DPQMEWDNEE LPEVGDPFWE  420
TFLRSPTAFL ADTDLNLTDE TLPVETDPDL TDETLCAETD PNVTGETLEI SKRKTSESGW  480
DKSKNMARLT EQMGHLSSNS RSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-261110218120Heat shock factor protein 1
5d5u_B2e-261110227129Heat shock factor protein 1
5d5v_B2e-261110227129Heat shock factor protein 1
5d5v_D2e-261110227129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213220NKKRRLKP
2214219KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV28960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070307.20.0LOW QUALITY PROTEIN: heat shock factor protein HSF8
SwissprotQ401521e-165HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A2Z7B4L90.0A0A2Z7B4L9_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009781208.11e-177(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64131931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-123heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]