PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV29369.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family LSD
Protein Properties Length: 155aa    MW: 15999.7 Da    PI: 8.3655
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV29369.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD144.33e-14731125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                CggCrt+L YPrGA++VRCa+C  V
  KZV29369.1  7 CGGCRTVLLYPRGATNVRCAICSMV 31
                **********************876 PP
2zf-LSD136.86.4e-124670125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                CggCrtlL+   GA sVRC++C+tV
  KZV29369.1 46 CGGCRTLLMHAQGAASVRCSCCHTV 70
                ************************9 PP
3zf-LSD131.72.5e-1088105118
     zf-LSD1   1 CggCrtlLsYPrGApsVR 18 
                 Cg+Cr++L+YP+GApsV+
  KZV29369.1  88 CGNCRIMLMYPAGAPSVH 105
                 *****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010537.9E-14432IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-12731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.8E-154373IPR005735Zinc finger, LSD1-type
PfamPF069436.6E-114670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.0E-685104IPR005735Zinc finger, LSD1-type
PfamPF069438.0E-888105IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MQSQLMCGGC RTVLLYPRGA TNVRCAICSM VTPAPLAGMD MAQLICGGCR TLLMHAQGAA  60
SVRCSCCHTV NLVPAVATMP NHVAHVSCGN CRIMLMYPAG APSVHQTVGN SPPTSKPSTS  120
SATVPSQNQT VVVQNPMTVD ESGKLVSNVV VGVTT
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV29369.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096731.12e-72protein LSD1
SwissprotQ2QMB32e-54LOL2_ORYSJ; Protein LOL2
TrEMBLA0A2Z7BC371e-106A0A2Z7BC37_9LAMI; Uncharacterized protein
STRINGXP_009758570.12e-69(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.71e-46LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]