PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV29917.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 257aa    MW: 29280.1 Da    PI: 9.3329
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV29917.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.15.5e-17117171256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++k q  +Lee F+++ +++ ++++eLA++l+L  rqV vWFqNrRa+ k
  KZV29917.1 117 RKKLRLNKIQSSRLEESFKRHTTLNPKQKQELARELKLRPRQVEVWFQNRRARTK 171
                 778889999********************************************98 PP
2HD-ZIP_I/II116.12.1e-37117207192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rl+k q++ LEesF+++++L+p++K+elareL+l+prqv+vWFqnrRARtk+kq+E d+e L++++d+l++en+rL+ e +eL+ +lk
   KZV29917.1 117 RKKLRLNKIQSSRLEESFKRHTTLNPKQKQELARELKLRPRQVEVWFQNRRARTKLKQTELDCELLRKCCDRLTDENRRLHMELKELK-ALK 207
                  69*************************************************************************************9.565 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-1596174IPR009057Homeodomain-like
PROSITE profilePS5007117.427113173IPR001356Homeobox domain
SMARTSM003895.7E-14115177IPR001356Homeobox domain
SuperFamilySSF466891.75E-16115182IPR009057Homeodomain-like
PfamPF000461.8E-14117171IPR001356Homeobox domain
CDDcd000862.06E-14117174No hitNo description
PROSITE patternPS000270148171IPR017970Homeobox, conserved site
PfamPF021831.9E-8173207IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.5E-21173216IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGFDEPSKTR LDLGLGISST STADAAHVNA HRFWKISEPS LTLSLCGGTE NQIHAAKTVD  60
FDDLNRVFED RETDDLFRQD STGASSLSNL SVKREREHRS SEDEVGVQRA YRGEDERKKL  120
RLNKIQSSRL EESFKRHTTL NPKQKQELAR ELKLRPRQVE VWFQNRRART KLKQTELDCE  180
LLRKCCDRLT DENRRLHMEL KELKALKSAQ PLYMQLPAAT LTMCPSCERI HGHGRGGGVA  240
ETSAKGSFTI SFKPALV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165173RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV29917.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099420.12e-89homeobox-leucine zipper protein HAT22-like
SwissprotP466049e-68HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2Z7BD950.0A0A2Z7BD95_9LAMI; Uncharacterized protein
STRINGSolyc02g091930.2.11e-84(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-70HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]