PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV30078.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 226aa    MW: 25381.4 Da    PI: 9.4137
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV30078.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000145981123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C++ F ++  L  H++ H
  KZV30078.1 59 FSCNYCSRKFYSSQALGGHQNAH 81
                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.4E-65686No hitNo description
PROSITE profilePS5015711.6555986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEEQIQAQKE NRINPDLEFD LNLSTKDFSD QTSNQELTLF QISVPPHDSM LHESEPRVFS  60
CNYCSRKFYS SQALGGHQNA HKRERTIAKR GQRHCSGGAY FQHRDMAELR YPSMASLPLH  120
GSFNRSLGIQ VHSTIHKPSV LVPPFNQPGW FRKPLDQHPS IGRLAAENYH QVGQSSGGGA  180
ARFDGGRRFY PVAVDATGGF RSDASSQLKS RGNPEDMKKL DLSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV30078.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082208.12e-76zinc finger protein 1
TrEMBLA0A2Z7B7Z91e-168A0A2Z7B7Z9_9LAMI; Zinc finger protein 1
STRINGVIT_09s0002g09080.t012e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58272233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-39zinc-finger protein 1