PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV30125.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 442aa    MW: 48085.7 Da    PI: 8.0478
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV30125.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.1e-1563107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+eE+ ++++a k++G   W++I +++  ++t+ q++s+ qk+
       KZV30125.1  63 RERWTEEEHRKFLEALKLYGRA-WRRIEEHVS-TKTAVQIRSHAQKF 107
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.35E-1657111IPR009057Homeodomain-like
PROSITE profilePS5129421.24358112IPR017930Myb domain
TIGRFAMsTIGR015576.4E-1761110IPR006447Myb domain, plants
SMARTSM007171.9E-1262110IPR001005SANT/Myb domain
PfamPF002491.9E-1263106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-963103IPR009057Homeodomain-like
CDDcd001677.43E-1065108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MVSAAGTMQD QNGGTGSGTF PPSSNKSVIE LGTPSGTPSK DQFHGGEEFS PKVRKPYTIT  60
KQRERWTEEE HRKFLEALKL YGRAWRRIEE HVSTKTAVQI RSHAQKFFSK VARDTNGGDF  120
DTEKPIEIPP PRPKRKPMHP YPRKLVCPVK TGIVIPEKPT RSSSSTLSNS EPENQSPTSV  180
LSAVGSDACA GANCFSLISG SKDEYTSPDD QVSQELELLS QNESLVKEDS NETAAQSLKL  240
FGKTLLILDP HGQSNVAAMA SKLESSFENV GTCSFPWSIA PLSLYCGATN SDVYYRQVVR  300
DNSHPVDTQC PVSLPWLTLC STESPITQEV HNPTPIKGRI SCGLPGKDEE KEGSSTGSNT  360
ESVCTTGGEK NWGADSYGLS VERTSQGQKS LPSKISKAIS ARSAKFGKGF VPYKRCLGEN  420
LSTSTSNEAT GEREKQRVRL CL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV30125.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085926.11e-137protein REVEILLE 1
TrEMBLA0A2Z7B6K30.0A0A2Z7B6K3_9LAMI; Protein REVEILLE 1
STRINGXP_009790907.11e-100(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31852447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-53MYB_related family protein