PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV30214.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 127aa    MW: 13815.7 Da    PI: 9.4451
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV30214.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000313254223
                EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                +C  C+++Fs+   L  H+++ H
  KZV30214.1 32 RCAQCPRVFSTGKALGGHMSSaH 54
                6******************9988 PP
2zf-C2H217.21.4e-0581103123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ CgksFs+    + H+r+H
  KZV30214.1  81 FTCKCCGKSFSSEKGVHGHMRLH 103
                 89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035573154IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.5593159IPR007087Zinc finger, C2H2
PfamPF139124.6E-73254IPR007087Zinc finger, C2H2
PROSITE patternPS0002803354IPR007087Zinc finger, C2H2
SuperFamilySSF576676.24E-680106No hitNo description
PROSITE profilePS5015711.34481108IPR007087Zinc finger, C2H2
SMARTSM003550.07681103IPR015880Zinc finger, C2H2-like
PfamPF138947.3E-481103No hitNo description
Gene3DG3DSA:3.30.160.604.9E-481103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MGEEVQRGEG LEDSVVEKRA AIELGGKVKS PRCAQCPRVF STGKALGGHM SSAHGPSKKS  60
DSSPKNLKSK KNHESFQAGK FTCKCCGKSF SSEKGVHGHM RLHPERDRRA MKPPAESEIE  120
NPVDILE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV30214.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022899504.14e-19uncharacterized protein LOC111412859
TrEMBLA0A2Z7B6V67e-87A0A2Z7B6V6_9LAMI; Uncharacterized protein
STRINGXP_009591959.12e-17(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.11e-09C2H2-like zinc finger protein