PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV30368.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family Trihelix
Protein Properties Length: 492aa    MW: 56786.6 Da    PI: 6.3801
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV30368.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix361.8e-1168122261
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkry 61 
                 W+ +e laL+++r++me+++ +       We vs+k+++ gf r+++qCkek+e  +  +
  KZV30368.1  68 WSADELLALLKVRSSMENWFPDM-----SWELVSRKLAALGFIRNAEQCKEKFEAESLHF 122
                 *********************98.....8************************9876666 PP
2trihelix93.61.9e-29387472185
    trihelix   1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                 rW+++evlaLi++r +   +++++k  +k+plWe++s  m+e g++rs+k+Ckekwen+nk+++k+k+++kkr s +s+tcpyf+ql
  KZV30368.1 387 RWPRDEVLALINLRCKFSGNIEETKegAKGPLWERISLGMMELGYKRSSKRCKEKWENINKYFRKTKDSSKKR-SIDSRTCPYFHQL 472
                 8*********************8654599*******************************************8.78889*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.13360116IPR017877Myb-like domain
PfamPF138372.8E-766119No hitNo description
CDDcd122031.89E-21386453No hitNo description
PfamPF138371.3E-18386473No hitNo description
PROSITE profilePS500906.737387446IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MFNGVPSDEF HRFISSRNPS LPIPLHSFSD NFNPFSSSPS SLQQFQRQDA VVKNAGKQPQ  60
RDGSGDPWSA DELLALLKVR SSMENWFPDM SWELVSRKLA ALGFIRNAEQ CKEKFEAESL  120
HFNSLSYEKN YRIFNEFDPF YTSENQEKSH VPETVKQITE GDKVQQNVHV EELVTEKFQE  180
NEEMVEKTEE RTRKRKRKDK LEMFEGFCEA IVSKMIAQQE ELHNKLIEDL VKRDKEMAER  240
EEAWKRQEMD RIKRENEIKA QEQAIAGERQ AKIIEFLKKI QDLVKLNDTA TGKIFQDFEL  300
LNSQNKPETS SSPRMVESHE NPSPDIPFES NTEATKATPS PPSPSSSHAT KNSEANSCSI  360
SVLTNENNLP SHKSCQMIDS RGDIGKRWPR DEVLALINLR CKFSGNIEET KEGAKGPLWE  420
RISLGMMELG YKRSSKRCKE KWENINKYFR KTKDSSKKRS IDSRTCPYFH QLYSLYGGGT  480
LENQPNVSEN SE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192197RKRKRK
2192198RKRKRKD
3194199RKRKDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV30368.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078730.11e-155trihelix transcription factor GTL2
TrEMBLA0A2Z7B8X00.0A0A2Z7B8X0_9LAMI; Uncharacterized protein
STRINGVIT_14s0030g01860.t011e-134(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137001013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.14e-69Trihelix family protein