PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV30504.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

GRAS

Protein Properties

Length: 573aa MW: 63973.9 Da PI: 5.2323

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV30504.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	288.5	1.8e-88	196	568	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykal..ppsetsekn.sseelaalklfsevsPilkfsh 95 lv+ Ll+c+e v ++ e a++lL+ l +s++g+p+qRl++yfteAL++r+ r++ ++ ++ + e++ k ++ + ++l +f++ P+ +++ KZV30504.1 196 LVQNLLSCVEKVGEQRYESARKLLEGCDRLgSSSSGSPIQRLVFYFTEALHERIDRETGRVTSKGlgKKFEDPIKAwTAVNNSILIAFHNKLPLSQITK 294 6899************************99999*****************6655555541433344333345555555556******** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 ++ qaIl+ v+g ++H+iDf+i Gl+ L+qaLa R e p +l++T+vg sk++lee ++rL++fAe+l+++f+f+v++++++ dl++ + KZV30504.1 295 FAGIQAILDHVAGTGKIHVIDFEIRTGLHITILMQALAVRCEHPVeHLKVTAVGT---RSKKTLEEANRRLTSFAESLKLKFSFSVMMVEDILDLDPAM 390 ************************************966655*****...68*********************************** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++++++E++a+ ++ l ++ ++ le+ ++++++++sP v+vv+e e ++ns+ F +rf+eal +y + +++++a l ++e r+ E +++g KZV30504.1 391 FELESEEKVAIFAAYTLTNMIVQPNRLEH----LIRVIRTISPCVMVVSEVEGNCNSPIFEDRFVEALFFYGSYYEAIAACLKDDEEFRTAAESVCFGS 485 ****************977777777....************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +i+n+vaceg+er+ rh + + Wr+ ++++G+++v+ls + qa+l+l++++ +d ++ + +sl++gWk+ pL s+SaW+ KZV30504.1 486 SIRNIVACEGEERKIRHVSISVWRAFFTSFGLEEVELSMSSLYQANLVLNNFAcGDSFTFAVDGKSLIIGWKGSPLSSLSAWK 568 ********************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.521	170	547	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.4E-86	196	568	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence Send to blast
MMFTYMSQDE LVHRSAGLDQ YGLLFSPEIL AEQNGFWGVE GETCMDVDLF GHVAGFECDS 60 TISALPISKS YSYEDFGCSD SLSPDVAETR KVVGKDNLER SAHEKRGGFL FRSESFEILK 120 RYGSRCRKLD FQKVNDTEPR IGNDAATLSA ETIIRLAAER FIQSISRSSD EISVLSHPYP 180 SAILCHSAGD SESVQLVQNL LSCVEKVGEQ RYESARKLLE GCDRLGSSSS GSPIQRLVFY 240 FTEALHERID RETGRVTSKG LGKKFEDPIK AWTAVNNSIL IAFHNKLPLS QITKFAGIQA 300 ILDHVAGTGK IHVIDFEIRT GLHITILMQA LAVRCEHPVE HLKVTAVGTR SKKTLEEANR 360 RLTSFAESLK LKFSFSVMMV EDILDLDPAM FELESEEKVA IFAAYTLTNM IVQPNRLEHL 420 IRVIRTISPC VMVVSEVEGN CNSPIFEDRF VEALFFYGSY YEAIAACLKD DEEFRTAAES 480 VCFGSSIRNI VACEGEERKI RHVSISVWRA FFTSFGLEEV ELSMSSLYQA NLVLNNFACG 540 DSFTFAVDGK SLIIGWKGSP LSSLSAWKFY SVL

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence Send to blast

MMFTYMSQDE LVHRSAGLDQ YGLLFSPEIL AEQNGFWGVE GETCMDVDLF GHVAGFECDS  60
TISALPISKS YSYEDFGCSD SLSPDVAETR KVVGKDNLER SAHEKRGGFL FRSESFEILK  120
RYGSRCRKLD FQKVNDTEPR IGNDAATLSA ETIIRLAAER FIQSISRSSD EISVLSHPYP  180
SAILCHSAGD SESVQLVQNL LSCVEKVGEQ RYESARKLLE GCDRLGSSSS GSPIQRLVFY  240
FTEALHERID RETGRVTSKG LGKKFEDPIK AWTAVNNSIL IAFHNKLPLS QITKFAGIQA  300
ILDHVAGTGK IHVIDFEIRT GLHITILMQA LAVRCEHPVE HLKVTAVGTR SKKTLEEANR  360
RLTSFAESLK LKFSFSVMMV EDILDLDPAM FELESEEKVA IFAAYTLTNM IVQPNRLEHL  420
IRVIRTISPC VMVVSEVEGN CNSPIFEDRF VEALFFYGSY YEAIAACLKD DEEFRTAAES  480
VCFGSSIRNI VACEGEERKI RHVSISVWRA FFTSFGLEEV ELSMSSLYQA NLVLNNFACG  540
DSFTFAVDGK SLIIGWKGSP LSSLSAWKFY SVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-41	193	568	1	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV30504.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100773.1	0.0	scarecrow-like protein 18
TrEMBL	A0A2Z7B7R7	0.0	A0A2Z7B7R7_9LAMI; Uncharacterized protein
STRING	Migut.G00048.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3427	21	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	2e-54	RGA-like 2