PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV30585.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 254aa    MW: 29620.9 Da    PI: 8.1843
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV30585.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.63.7e-141749941
                HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
      SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifs 41
                r  t+  R++ +lKKA+ELS+LC+++v++i++ 
  KZV30585.1 17 RRKTYETRKKALLKKASELSTLCGVDVCMIMYP 49
                6679***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.073148IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-8160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-14163IPR002100Transcription factor, MADS-box
PfamPF003195.6E-131550IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRARLRLEL QRCPKARRKT YETRKKALLK KASELSTLCG VDVCMIMYPP PIKNEETEPF  60
VWSNDPAQVL NLIESHKLSR LGGEWSSSKT CDLTWFYKDQ TTKIEEEINK VKKANRHLKY  120
PNCEEKYASL TSEELRIFSE VLTAKLEYAK QTINLLKQRK SFQVPDSSFS MNPPIDPLQT  180
YFDAQSYLEN QQRMMMMMIH YHNYNVMNYA PPMSFGMQNV GDSVQGYGED QLMISSDYFH  240
QVDVYSGFHP NMGF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11425KARRKTYETRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV30585.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7B7Y30.0A0A2Z7B7Y3_9LAMI; MADS-box transcription factor PHERES 2-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.19e-11M-type_MADS family protein