PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV30587.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 164aa MW: 18470.5 Da PI: 8.138

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV30587.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4.1e-05	38	61	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ykC++C+++F++ L H ++ H KZV30587.1 38 YKCGHCPEVFNSGRALAYHRSSvH 61 9******************99988 PP
2	zf-C2H2	19.2	3.2e-06	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ Cgk F ++s + H+++H KZV30587.1 80 YICEQCGKEFQSPSAVRGHMSVH 102 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.25E-7	36	102	No hit	No description
SMART	SM00355	0.023	38	61	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	0.014	38	63	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.325	38	66	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	40	61	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.2E-5	79	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	9.4E-4	80	102	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.3E-4	80	104	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.448	80	107	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MAEEDRRDLA LGDDVDSAAA EEDTASTIVA AEDAIKGYKC GHCPEVFNSG RALAYHRSSV 60 HCESKKLKFM QTNNSEIGQY ICEQCGKEFQ SPSAVRGHMS VHRSRYRRWT KPPTKQHHIE 120 NPPQNQELLA DPKSDRKWTA AGSNQNCTET TKNIAGNYKR KKMD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV30587.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2Z7BF62	1e-122	A0A2Z7BF62_9LAMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2050	22	63