PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV30954.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NF-YB

Protein Properties

Length: 179aa MW: 20633.3 Da PI: 5.5768

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV30954.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	105	5e-33	7	97	2	92
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 r+ + +lP+an+++im+++lP+naki+++aketvqecvsefi +t +a++ c+r++r+ti+++dll al t f++y+++l++ +k r+ KZV30954.1 7 RDAKLYLPMANITKIMRRMLPENAKIADAAKETVQECVSEFIDHITRQANEICHRDHRRTITPEDLLLALETTKFHKYAQTLTLLSRKQRK 97 566789****************************************************************************988777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.7E-34	2	98	IPR009072	Histone-fold
SuperFamily	SSF47113	1.46E-28	11	98	IPR009072	Histone-fold
Pfam	PF00808	1.2E-24	12	76	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.6E-6	40	58	No hit	No description
PRINTS	PR00615	3.6E-6	59	77	No hit	No description
PRINTS	PR00615	3.6E-6	78	96	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MQESFKRDAK LYLPMANITK IMRRMLPENA KIADAAKETV QECVSEFIDH ITRQANEICH 60 RDHRRTITPE DLLLALETTK FHKYAQTLTL LSRKQRKEDV PSNIMPGGPL LWPNVVGSVD 120 AHDQVAQQEV DHWPRNMLTD PMDSHYKPNF GEGSSCGPTN DGFDLSLEEF DVYQQFEFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-25	7	97	7	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV30954.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095575.1	2e-31	nuclear transcription factor Y subunit B-6-like
Refseq	XP_012839450.1	3e-32	PREDICTED: nuclear transcription factor Y subunit B-9-like
TrEMBL	A0A2Z7B8W1	1e-133	A0A2Z7B8W1_9LAMI; Nuclear transcription factor Y subunit B-9-like
STRING	Migut.E01594.1.p	7e-32	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	1e-27	NF-YB family protein