PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV31365.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family CO-like
Protein Properties Length: 383aa    MW: 42642.9 Da    PI: 6.2416
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV31365.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.7e-06544639
    zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                C+ ++e++ + +C+++  +lC +C  + H+       H++
  KZV31365.1  5 CDFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44
                *****************************65677777765 PP
2zf-B_box18.73.6e-064688440
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 +C+++ ++++   C + +  lC++C   eH g      H+++
  KZV31365.1 46 LVCERCTSQPAFVRCIEEKISLCQNCDWMEHVGsnishvHKIQ 88
                68*****************************888899888886 PP
3CCT56.69e-20326369144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 R  a++RYkeK+ktRkFeKk+rY+sRKa+A+ R R KGrFvk+ 
  KZV31365.1 326 RTDAVKRYKEKKKTRKFEKKVRYASRKARADVRRREKGRFVKAG 369
                 889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.485147IPR000315B-box-type zinc finger
CDDcd000211.10E-7447No hitNo description
SMARTSM003363.1E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.664390IPR000315B-box-type zinc finger
PROSITE profilePS5101714.644326368IPR010402CCT domain
PfamPF062039.7E-15326368IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGYLCDFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSR RHSRTLVCER CTSQPAFVRC  60
IEEKISLCQN CDWMEHVGSN ISHVHKIQAV NSYSGCPSAT ELSAIWWFLL DSTNEKGTGY  120
MSITDDPKHF SGLQQKGNVR DASLETEASD LHSENLDKSA TQMESLSPLL GPKLHNMVQA  180
PVSQFAMPKV FLPERKGKDA FQDNSFHDDF NVDEVDINFK NYEELFGLAL NNSENLFDDE  240
GLFGTKAMSY TAEVSSVGGV NVTLPACSNA ASVDSVISCK TEPNICFTGE ISTTDFQDCG  300
ASSLQIMGEP PWCPPVPESS LPSSSRTDAV KRYKEKKKTR KFEKKVRYAS RKARADVRRR  360
EKGRFVKAGD AYDYDPLIPS RSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV31365.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100551.11e-170zinc finger protein CONSTANS-LIKE 9
RefseqXP_011100552.11e-170zinc finger protein CONSTANS-LIKE 9
RefseqXP_011100553.11e-170zinc finger protein CONSTANS-LIKE 9
SwissprotQ9LUA91e-119COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A2Z7BBC60.0A0A2Z7BBC6_9LAMI; Uncharacterized protein
STRINGMigut.M00064.1.p1e-153(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-103B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]