PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV31416.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 326aa    MW: 35859.4 Da    PI: 5.4557
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV31416.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13134180354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++ +k+L
  KZV31416.1 134 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQQVKEL 180
                 79*************************9.....8***********9988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.45131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10134180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-13135189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-14135187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-12137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.54E-4144183No hitNo description
Gene3DG3DSA:3.30.70.2605.3E-4217265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MQQQNGTEAY IGVGGNVGGG STLTFPEVSQ ILPWNLPPVH TFNPVCPTRD HDPFLFPPPP  60
PQPPTSSYGG LFNRMASGLQ FGYDGPGSDH QMRLISESLC QMVSPNSAPF GLHAELQKMT  120
AQEIMDAKAL AASKSHSEAE RRRRERINNH LAKLRSLLPS TTKTDKASLL AEVIQQVKEL  180
KRQTSLIAET SPVPTETDEL IVDNASEEDG KLLIKASICC EDRSDLLPDL IRTLKTLRLK  240
TLKAEITTLG GRVKNVLFIT GDDEDSNNNN ATENNEDQNL QQQQYNICSI QEALKAVMEK  300
SNGEESGSVS VKRQRTNISI LEPRSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV31416.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077316.11e-155transcription factor bHLH30
SwissprotQ9S7Y11e-99BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2Z7BHK40.0A0A2Z7BHK4_9LAMI; Basic helix-loop-helix family protein
STRINGcassava4.1_010668m1e-144(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40832444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]