PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV31742.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 155aa    MW: 17439 Da    PI: 5.4042
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV31742.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.19.8e-132872347
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                ie+    ++tf+kRr+g++KK   L+   dae+avi fs +g+ly
  KZV31742.1 28 IEDRGELNTTFTKRRQGLFKKTMDLCEKFDAEAAVIAFSRSGNLY 72
                77888889***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.0E-91577IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.6431878IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-82040IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-152191IPR002100Transcription factor, MADS-box
CDDcd001202.26E-152175No hitNo description
PfamPF003195.3E-142872IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-84055IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-85576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDAEENQIVA VTENKKRRKD RRVGIRLIED RGELNTTFTK RRQGLFKKTM DLCEKFDAEA  60
AVIAFSRSGN LYVLGDPEFY PLLKRYLADP SSSLAAEGQL PPHQKPALTD MESRIDEALG  120
KGRAAWDLIT ENLGLNQLEE MEKAVEVMIT KLAAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11418KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV31742.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7BBN61e-110A0A2Z7BBN6_9LAMI; MADS-box transcription factor 47-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-14AGAMOUS-like 61