PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV31778.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family LBD
Protein Properties Length: 205aa    MW: 22206.2 Da    PI: 6.8806
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV31778.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26032.22.9e-10121033499
      DUF260  34 hklFGasnvlkllkalpeeer..........................edamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +k++G++ +l+l+++ p++ r                          +++++sl+y A+ r+ +P+ G++g+++++ +ql++ +++++l+++
  KZV31778.1  12 AKFYGRAGLLNLIDSGPKNLRpgnafmpesidslyilssevfitscsSAIFRSLLYDACGRIVNPIDGSAGLLWSGGWQLCEDAVDAVLRGA 103
                 56666666666666666666666666666666666666666666666899********************************9999888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.1E-45897IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MAMNQGQSIF LAKFYGRAGL LNLIDSGPKN LRPGNAFMPE SIDSLYILSS EVFITSCSSA  60
IFRSLLYDAC GRIVNPIDGS AGLLWSGGWQ LCEDAVDAVL RGAPITRMAS HAAAVETKNL  120
PALKAACDIR HVSRVEHFPG SSDLHRVRER RRFKNSCRRT KQNVEVESSA SEEPENSADA  180
DTVRCCEIEL DLTLCSGAKP TTAGA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV31778.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099556.14e-49LOB domain-containing protein 41
TrEMBLA0A2Z7BI231e-150A0A2Z7BI23_9LAMI; LOB domain-containing protein 40
STRINGXP_009801662.17e-45(Nicotiana sylvestris)
STRINGPGSC0003DMT4000329385e-45(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-39LOB domain-containing protein 41