PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV32562.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

FAR1

Protein Properties

Length: 241aa MW: 28212.7 Da PI: 8.2023

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV32562.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.6	4.9e-24	40	136	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+YA+++GFs r ++skk+k ++e+++++fvC keg+++e +++ + ++r r rtgCk kl++ ke+ ++w ++++ ++HnH+l+ KZV32562.1 40 SFYNQYARQAGFSARLNNSKKNKITNEVVWKQFVCFKEGYTDEIQSSkklrgdQPIRERARGGVRTGCKSKLTIVKEQtGSNWIISTFIENHNHQLS 136 5**************************************9988887888755556678899******99998899************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.5E-22	40	136	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MSFLAMEEIN TDDQMYVPQV VDERKPKIGM RFASIDEAFS FYNQYARQAG FSARLNNSKK 60 NKITNEVVWK QFVCFKEGYT DEIQSSKKLR GDQPIRERAR GGVRTGCKSK LTIVKEQTGS 120 NWIISTFIEN HNHQLSTPSK VHLLRSHRSV STAKKALTQQ FAKANVPTYQ QMRLLEIEYG 180 WDEHVGCTER DIRNFEKEQR DEQKGFNAET LIEFFESEKE KNSDFFFSYE TDSEGRFCRC 240 F

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV32562.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015878435.1	5e-88	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2Z7BDZ1	0.0	A0A2Z7BDZ1_9LAMI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-33	FAR1-related sequence 5