PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV32928.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family LBD
Protein Properties Length: 267aa    MW: 30541.5 Da    PI: 6.852
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV32928.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.21.2e-37101101100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +CaaCk+ rrkC++ C+lapyfpa++pk f+nvh+lFG+snv+k+l++l++++ r+dam+s++yeAe+r r PvyG+  +i++l+ ql+ +++el +++
  KZV32928.1  10 SCAACKYRRRKCTATCPLAPYFPANKPKMFQNVHRLFGVSNVTKTLESLKTKDeRDDAMKSIIYEAEMRDRIPVYGCPYIINQLSLQLHAANEELRKVN 108
                 6************************************************76655*****************************************9987 PP

      DUF260  99 ee 100
                  +
  KZV32928.1 109 LQ 110
                 65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.5279111IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-3610107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MTLKGGSTPS CAACKYRRRK CTATCPLAPY FPANKPKMFQ NVHRLFGVSN VTKTLESLKT  60
KDERDDAMKS IIYEAEMRDR IPVYGCPYII NQLSLQLHAA NEELRKVNLQ IATCKEQSNQ  120
LVDHGSNQRV EDQLVGHPFC SPSPPQEFGG VDSQDAEGMG SVPCRFFMNA DGGIYMESYD  180
DVARSVLGLD FGSDVIRNHS LLSTHVEREP NLFDIQKEPK ILVQDYGGLR YSTTDDHDTK  240
SYLETYESRY INVTWFRYIK FFIYWTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2621114111LOB family transfactor Ramosa2.1
5ly0_B2e-2621114111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV32928.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7BLD00.0A0A2Z7BLD0_9LAMI; LOB domain-containing protein 27-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.18e-41LOB domain-containing protein 27