PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV32943.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 193aa    MW: 22321.8 Da    PI: 8.2464
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV32943.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.8e-151158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l + ++  G g W++ ar  g++Rt+k+c++rw++yl
       KZV32943.1 11 KGPWTIEEDLILFNHIANNGEGVWNSLARSAGLKRTGKSCRLRWLNYL 58
                     79********************************************97 PP
2Myb_DNA-binding55.41.4e-1764107146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ d+++++G++ W++Ia++++ gRt++++k++w++
       KZV32943.1  64 RGNITAEEQLLIMDLHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 107
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-20561IPR009057Homeodomain-like
PROSITE profilePS5129413.929658IPR017930Myb domain
SuperFamilySSF466891.01E-289105IPR009057Homeodomain-like
SMARTSM007171.6E-101060IPR001005SANT/Myb domain
PfamPF002491.1E-131158IPR001005SANT/Myb domain
CDDcd001674.00E-81358No hitNo description
PROSITE profilePS5129425.05759113IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2462113IPR009057Homeodomain-like
SMARTSM007175.7E-1563111IPR001005SANT/Myb domain
PfamPF002497.0E-1664107IPR001005SANT/Myb domain
CDDcd001671.54E-1168107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDRNQESEVR KGPWTIEEDL ILFNHIANNG EGVWNSLARS AGLKRTGKSC RLRWLNYLRP  60
DVRRGNITAE EQLLIMDLHA KWGNRWSKIA KHLPGRTDNE IKNYWRTRIQ KHIKQAESRL  120
LPGQTSENSS DQTSTSTSNL SCRYPTKHTG DPYSPPSFNG SVDNFELPFP HETNDSNIWN  180
MEDIWSMQLL NGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-25811324128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV32943.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027073189.13e-98myb-related protein 305-like
SwissprotP813916e-90MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A2Z7BER11e-141A0A2Z7BER1_9LAMI; Myb-related protein 305-like
STRINGMigut.H00102.1.p7e-94(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.13e-75myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]