PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV32987.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 711aa    MW: 79492.8 Da    PI: 6.1418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV32987.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000445465831355
                 HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 R+ i +++ eLrel+P+ +      K s  + Le++++++  Lq
  KZV32987.1 546 RQLIQDRIKELRELVPSgS------KCSIDSLLERTIKHMLFLQ 583
                 78899************55......7777789999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.5E-325163IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.255533582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-5544593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-4546591IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MESQLQQMLR SLCFNTGWKY AIFWKLEHQE QIILTSEDAY YDCNLYPDQK NFTELAHSLN  60
YGPYSHDPLG LAVAKMSYQA YSLGEGIVGQ VAVSGKHSWV YSDNHVANSS STSEPFDGWK  120
NQFSAGIKTI AVVAVIPHGV VQLGSLHKIT EDLKLIDHIR NVFSDLQDSL AGAIPRSLHS  180
TIEKSFPSDI RATIPNSAGI HDHKMKLDSS FLEDGTSLCS QLLSSIGSNH VSISPHSGRP  240
LTVKIKLRET DLLSIPRHEI SLPSSSESIL TRQQMGSFCE IKCGEETNDL KDSGQRPEIS  300
SLPAIKNDKG DNLYLYDATL LSDGHQMNLS CLPLENLDSL TFQDRNEFYV PETISEQLHP  360
DFERNLELRS KFNNFETRLS PFSFCSGYEL YEALGPSFRK QIDYVWEEEK SHSDMVIENP  420
EGMDSSSLLT ENPDMHLLEA LVAKVSGTDT TANSSKSCQE TEESLLAAER TPCTSVGTIG  480
SAGYSFDRAT SSSLNSLSHG IESLKGLLSP SSSRGSEHLE MPQKPVKINK KRTRTGENSR  540
PRPRDRQLIQ DRIKELRELV PSGSKCSIDS LLERTIKHML FLQSITKHAE KLHKCSASKL  600
LDKNMDMRRF SSEQGSSWAV EVGSNSKVYP IIVENINVHG QMLVEMMCEQ CSQFLDIAET  660
IRSLGLTILK GVSEACGNKT WMCFVVENKK SMHRMDVLWS LMQILQSKIS N
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV32987.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020550471.10.0transcription factor EMB1444
TrEMBLA0A2Z7BG320.0A0A2Z7BG32_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000251460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1035722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-75conserved peptide upstream open reading frame 7