PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV32994.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 251aa    MW: 28072.3 Da    PI: 5.0601
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV32994.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l++ ++ +G g+W++ +++ g+ R++k+c++rw +yl
       KZV32994.1 14 KGPWTAEEDSILINFINWHGHGNWRALPKRAGLLRCGKSCRLRWMNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding48.61.9e-1567111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T eE+e ++ +++qlG++ W+  a++++ gRt++++k+ w++ 
       KZV32994.1  67 RGNFTREEEETIIALHQQLGNK-WSVMAARLP-GRTDNEIKNVWHTN 111
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-24564IPR009057Homeodomain-like
PROSITE profilePS5129415.32961IPR017930Myb domain
SuperFamilySSF466891.02E-2910108IPR009057Homeodomain-like
SMARTSM007177.4E-131363IPR001005SANT/Myb domain
PfamPF002496.6E-151461IPR001005SANT/Myb domain
CDDcd001672.82E-101661No hitNo description
PROSITE profilePS5129422.51662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2565116IPR009057Homeodomain-like
SMARTSM007177.2E-1366114IPR001005SANT/Myb domain
PfamPF002492.2E-1367111IPR001005SANT/Myb domain
CDDcd001677.83E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTAE EDSILINFIN WHGHGNWRAL PKRAGLLRCG KSCRLRWMNY  60
LRPDIKRGNF TREEEETIIA LHQQLGNKWS VMAARLPGRT DNEIKNVWHT NLKKRIARNT  120
RSEPKREQIP ITGFDPKSGN DSEPNSPADS SSVTSSATTT YTAADADGPD PHITAGRNFL  180
EMDESFWSEV FSANDSSEAS DFSTGNEDLE LQFGMEENLF GGDLSMKGGA MDFWLELLNG  240
TEELTGLPAF L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-25121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV32994.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080041.16e-94transcription factor MYB14
TrEMBLA0A2Z7BEY90.0A0A2Z7BEY9_9LAMI; Myb domain protein 13
STRINGPOPTR_0005s24550.12e-86(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-72myb domain protein 15