PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV33094.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 233aa    MW: 26049.3 Da    PI: 9.1025
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV33094.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
       KZV33094.1 14 KGAWTEEEDRRLIAYIHSHGEGCWRSLPKAAGLVRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding55.51.3e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T +Ede++++++ +lG++ W++Ia +++ gRt++++k++w+++
       KZV33094.1  67 RGNFTRQEDEIIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-24564IPR009057Homeodomain-like
PROSITE profilePS5129418.985961IPR017930Myb domain
SuperFamilySSF466892.95E-2912108IPR009057Homeodomain-like
SMARTSM007171.1E-131363IPR001005SANT/Myb domain
PfamPF002494.9E-151461IPR001005SANT/Myb domain
CDDcd001671.93E-111661No hitNo description
PROSITE profilePS5129427.48462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2765116IPR009057Homeodomain-like
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002491.3E-1567111IPR001005SANT/Myb domain
CDDcd001673.73E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGRSPCCEKR HIKKGAWTEE EDRRLIAYIH SHGEGCWRSL PKAAGLVRCG KSCRLRWINY  60
LRPGLKRGNF TRQEDEIIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLIGSG  120
IDPQTHCPLK SAAASKGSLD LDFRNSSSSH PISHNHRRPL TPPVDEDDKC HSSTTEESQP  180
HQEDAVLDLE LSIWFSAPQL KHGNSASFNS SSTVSGNIFY DFLRTDAGGG GAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV33094.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022852773.14e-97myb-related protein 330-like
SwissprotP813957e-84MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A2Z7BF911e-172A0A2Z7BF91_9LAMI; Myb-related protein 330-like
STRINGXP_009772294.13e-86(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.15e-83myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]