PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV33209.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HB-PHD
Protein Properties Length: 678aa    MW: 75450.3 Da    PI: 4.5513
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV33209.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.12.9e-13559610354
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 +   +++ q+++L + F++n+yp ++ +e LAk lgL+ +qV  WF N R +
  KZV33209.1 559 TYKILSDAQTQRLFKSFQENQYPERAVKENLAKDLGLSIQQVGKWFDNTRWR 610
                 5667899******************************************977 PP
2PHD38.72.2e-13262317151
                 SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
         PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                 +C+ Cg+   + +++++lCdg C++ fH+ Cl+++l +e++p g  +wlC+ C++k
  KZV33209.1 262 FCAKCGSkdLQVDNDIILCDGaCQRGFHQFCLEPPLLKEQIPPGdeSWLCPGCDCK 317
                 699***965556********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.22E-13252320IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.7E-13258316IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.958260317IPR019787Zinc finger, PHD-finger
PfamPF006287.6E-11262317IPR019787Zinc finger, PHD-finger
CDDcd155041.06E-25262314No hitNo description
SMARTSM002495.3E-9262315IPR001965Zinc finger, PHD-type
PROSITE patternPS013590263314IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.4E-15549608IPR009057Homeodomain-like
SuperFamilySSF466896.42E-14550615IPR009057Homeodomain-like
PROSITE profilePS5007114.625554614IPR001356Homeobox domain
SMARTSM003892.0E-11556618IPR001356Homeobox domain
CDDcd000861.00E-12557610No hitNo description
PfamPF000461.1E-10559610IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MPDNSELDSK RAVTESLLYK DAKLISMEKN SEETRTEGPN NGDKAQIFSA EPSGQLWEVK  60
ISSAFGNLEE PFRSLPVDVE FSGASSGHAS EIPNSGKLKP MQVDAINEVG HMGAECEGIE  120
LQLRKRKARQ TSAVSSSWAL HEKSPEKFMV FEPGAVLSEG NTSGEQKRRG RKKKEFRCAE  180
NTQYRDGLPP IASTLVSTWP FALTFLEKLR PEKELQNAKS HILRYKLKIR ELFQHIDQSL  240
AVGKLPESLF DSKGEIYSED IFCAKCGSKD LQVDNDIILC DGACQRGFHQ FCLEPPLLKE  300
QIPPGDESWL CPGCDCKIDC LHMLKDFQES KVSILDNWEK IFPEAVAASG KKLDDTGMSS  360
DDSEDDDYDP DKPDRLEKVT GDESRSDGCP DLSASEVLVT PPDNGKYFVL PSDDSEDDDF  420
VPVAPDKDEL VKHETSSSDF SSDSEDLVGL IDDADVHGVD TGHSLPPPGH GSPSSGYDRR  480
KSKVDDLSYL LVNSEEPTSS KRHVERLDYK KLHDMDMKDE NQEEIENGPE RTHKTFTEMG  540
AQSSSAIVDS DGSKNRRSTY KILSDAQTQR LFKSFQENQY PERAVKENLA KDLGLSIQQV  600
GKWFDNTRWR FNHRPQTLSY DVESAQINNT SVQGNEPGLE NATVTNNNSS DRAAECQESN  660
AVVSQNPYCS SQSGQLSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167174RRGRKKKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV33209.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088187.11e-149pathogenesis-related homeodomain protein isoform X1
RefseqXP_011088188.11e-149pathogenesis-related homeodomain protein isoform X1
SwissprotP487869e-87PRH_PETCR; Pathogenesis-related homeodomain protein
TrEMBLA0A2Z7BIF50.0A0A2Z7BIF5_9LAMI; Uncharacterized protein
STRINGMigut.B00404.1.p1e-146(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.16e-67Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain