PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV33712.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 731aa    MW: 80529.3 Da    PI: 5.9944
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV33712.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.7e-162468147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
       KZV33712.1 24 RERWTEEEHNKFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.77E-161872IPR009057Homeodomain-like
PROSITE profilePS5129418.9891973IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-82168IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-162271IPR006447Myb domain, plants
SMARTSM007174.7E-132371IPR001005SANT/Myb domain
PfamPF002492.8E-132467IPR001005SANT/Myb domain
CDDcd001675.45E-102669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010243Biological Processresponse to organonitrogen compound
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043496Biological Processregulation of protein homodimerization activity
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MDLYSSGEEL LLKTRKPYTI TKQRERWTEE EHNKFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFT KLGGRARRGS VFLLVKGFNP WLEKESFVKG VPIGHTLNIN IPPPRPKRKP  120
SNPYPRKTST VVKDGKLSAP LSFLSQSQIT LDLEQEPLSE KSSDDGNNRK HVDREIENDS  180
AVFSLHETGA CANSSSLNKD SSASVAPINL CTFREYVPLS TDTSIQDETT QVFDAEQLRT  240
NQTCNKQLLQ EDGSFNTSNI GNSYLSHEKY CHDNRVDELK QSKNVDDLPT INDDVSQNCT  300
SHIPVHILEG SFGMNTQNVV LDTAHTDSRY QKMGVLGPPC LFMNPCGSTN PEHHSNASSS  360
SIHQPFPGFH PLSAAFQHQD DYQSFLHISS TFSNLLVSAL LQNPAAYAAA SFAATLWPCV  420
SGESSAGTPR GLQPKQMNTV PSMATIAAAT VAAATAWWAA HGLLPLCPPL DPGFTSTAPS  480
ASATPIDGNT RSENGEKKED NPDLALEDQQ LGQKCLAEFQ EQHSTLSSSC SEGIEGVKPN  540
CGSAVAETAP VADTVDKSNS RKQVDRSSCG SNTPSSSEVE AEGKEEKGVE DKEPKEDEEN  600
HPSGDPVNRR CRSLGSINDP WKEVSEEGRL AFQALFSREI LPQSFCHDLN FKRKKNSDME  660
STEGRPQLNL NDQGRLDDME EESTSKACRT GFKPYKRCSV EAKDTRMSTN CKDEEKGPKR  720
FRVGGIGKDS T
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV33712.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553443.10.0protein LHY-like
TrEMBLA0A2Z7BH700.0A0A2Z7BH70_9LAMI; Protein LHY-like
STRINGVIT_15s0048g02410.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97101315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.35e-40MYB_related family protein