PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV33934.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

WOX

Protein Properties

Length: 202aa MW: 22141.4 Da PI: 6.7936

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV33934.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	50.8	2.8e-16	27	87	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l ++ +++V++WFqNrR + ++ KZV33934.1 27 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKMLekfgSVGDANVFYWFQNRRSRSRR 87 89***************99***********************************997 PP
2	Wus_type_Homeobox	109.3	2.3e-35	26	89	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri+++Le++G ++d+NVfyWFQNr++R+r++q KZV33934.1 26 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKMLEKFGSVGDANVFYWFQNRRSRSRRRQ 89 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.548	23	88	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-14	24	94	IPR009057	Homeodomain-like
SMART	SM00389	1.5E-6	25	92	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.5E-9	26	92	IPR009057	Homeodomain-like
Pfam	PF00046	5.8E-14	27	87	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MGDQGQESGG SRPSYGGEAE QRNEPVRSRW TPKPEQILIL ESIFNSGMVN PPKDETVRIR 60 KMLEKFGSVG DANVFYWFQN RRSRSRRRQR QIQASLTAVE LPQAPPHGGG GAIQFDQINA 120 AGFMPGSSLS FSANSSSSSC LMGSGTSSSS GITENTCIPH NSHDFYSFSG LQELDHNPIF 180 SHSDASSLHY PPGELSFFFL FS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV33934.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011069976.1	9e-61	WUSCHEL-related homeobox 11-like
TrEMBL	A0A2Z7BHQ8	1e-146	A0A2Z7BHQ8_9LAMI; WUSCHEL-related homeobox 11-like
STRING	XP_002525671.1	2e-41	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6166	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	1e-34	WUSCHEL related homeobox 12