PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV33947.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family LBD
Protein Properties Length: 243aa    MW: 26122.2 Da    PI: 7.5779
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV33947.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.61.2e-39431441101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++Cv+ap+f+++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++i++lqqq+++l+ael++++
  KZV33947.1  43 PCGACKFLRRKCVSGCVFAPHFASDQgAARFAAVHKVFGASNVSKLLLHIPANRRHDAVVTIGYEAQARLSDPVYGCVSTIMALQQQVSSLQAELSMVQ 141
                 7*************************89*********************************************************************99 PP

      DUF260  99 eel 101
                 ++l
  KZV33947.1 142 TQL 144
                 885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.84742144IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-3943141IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDHEPQSNST RRRGSGKIRG GATARQVEAM AATEAVVAQH GAPCGACKFL RRKCVSGCVF  60
APHFASDQGA ARFAAVHKVF GASNVSKLLL HIPANRRHDA VVTIGYEAQA RLSDPVYGCV  120
STIMALQQQV SSLQAELSMV QTQLINSKLV SSNAFQCSAA QQHNPAAMLQ QPAYSNTSSA  180
SNNLINFGNA FAGPNFGETT ATSTCFEPGI HHMYKRGYPG RDEDDEDEEP AHDQVSFTNH  240
IFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-39411469113LOB family transfactor Ramosa2.1
5ly0_B2e-39411469113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV33947.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199992.11e-84PREDICTED: LOB domain-containing protein 20-like
SwissprotQ9SRV31e-68LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2Z7BIQ40.0A0A2Z7BIQ4_9LAMI; LOB domain-containing protein 20
STRINGcassava4.1_028764m4e-81(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-70LOB domain-containing protein 20