PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV34037.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 228aa    MW: 26500.8 Da    PI: 8.4502
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV34037.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605e-191663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll ++vk++G g+W+ +ar +g++R +k+c++rw +yl
       KZV34037.1 16 KGPWTAEEDRLLMEYVKLHGEGRWNNVARLVGLKRNGKSCRLRWVNYL 63
                     79********************************************97 PP
2Myb_DNA-binding52.11.5e-1669113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
       KZV34037.1  69 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 113
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.7561167IPR017930Myb domain
SuperFamilySSF466896.97E-3113110IPR009057Homeodomain-like
SMARTSM007172.7E-171565IPR001005SANT/Myb domain
PfamPF002491.2E-171663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-241770IPR009057Homeodomain-like
CDDcd001671.53E-121863No hitNo description
SMARTSM007171.4E-1468116IPR001005SANT/Myb domain
PROSITE profilePS5129418.04368118IPR017930Myb domain
PfamPF002498.6E-1469113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-2471116IPR009057Homeodomain-like
CDDcd001673.22E-1073114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAQNMGWGAV GEGWKKGPWT AEEDRLLMEY VKLHGEGRWN NVARLVGLKR NGKSCRLRWV  60
NYLRPDLKRG QITPHEESII LELHARWGNR WSTIARSLPG RTDNEIKNYW RTHFKKQGKP  120
SSITLEKSSA HVLRRQQLQQ QQQRHQQDQI DMNVIMSFML NDEGEYNVPI LNQSVQEISY  180
PSGGVLEEQG LLHSMVSGYS SMPEASTEDM AIWDGGLWNL DDRYHQWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261611727127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV34037.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022849439.11e-100transcription factor WER-like
RefseqXP_022849440.11e-100transcription factor WER-like
TrEMBLA0A2Z7BIZ91e-168A0A2Z7BIZ9_9LAMI; Myb domain protein 79 isoform 1
STRINGcassava4.1_014512m5e-90(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.16e-76myb domain protein 305