PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV34120.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 342aa    MW: 37083.2 Da    PI: 8.927
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV34120.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.65.2e-09151176227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 kt+lC  f     Ck+Gd+C++aHg+
  KZV34120.1 151 KTRLCTKFNTAEGCKFGDKCHYAHGE 176
                 9***********************96 PP
2zf-CCCH32.51.4e-10309334127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt+lC++f   G C++G++C+FaHg+
  KZV34120.1 309 FKTKLCDNFTN-GSCSFGEKCNFAHGE 334
                 69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563584112IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.82284113IPR000571Zinc finger, CCCH-type
PfamPF146080.7294110No hitNo description
Gene3DG3DSA:4.10.1000.104.6E-12148180IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.12E-7148179IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-4149176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535149177IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-6151176IPR000571Zinc finger, CCCH-type
SMARTSM003221.6E-12215285IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.9E-16216285IPR004088K Homology domain, type 1
PROSITE profilePS5008414.718216280IPR004088K Homology domain, type 1
PfamPF000136.9E-11218282IPR004088K Homology domain, type 1
SuperFamilySSF547913.21E-15218297IPR004088K Homology domain, type 1
CDDcd001052.65E-14218280No hitNo description
Gene3DG3DSA:4.10.1000.102.6E-16306340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8308338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.877308335IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-8308334IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-8309334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
METGGVKRRG EVEAGLNGNG DFKKSKRDHK IMINAHIAKV AHYIKMRRHG MHFTRGDEDF  60
ITVLQQKCNP FELLASRHVP KNALTLSVFC PVDYFSTSGC SFGDGCHFLH YVPGGIKGVT  120
RILGSNPALP VTRNAAGPPS FPDTLSRPAL KTRLCTKFNT AEGCKFGDKC HYAHGECELG  180
RPAHSSHEEL HAMGQMPGKY SSGHLDQNEP DLFGASATAK ISIDASLVGA VIGRGGMNSK  240
QICRVTGAKL AIRDHESDPN SKNIELEGSF DQIKHASQMV RELIVNVSSG LGRPTKNRAM  300
AGSGPGSNFK TKLCDNFTNG SCSFGEKCNF AHGEEELRKL PM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV34120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083138.11e-124zinc finger CCCH domain-containing protein 44-like
SwissprotQ69XQ31e-90C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A2Z7BIM40.0A0A2Z7BIM4_9LAMI; KH domain-containing protein
STRINGcassava4.1_012715m1e-115(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-56C3H family protein