PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV34828.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

FAR1

Protein Properties

Length: 170aa MW: 19684.3 Da PI: 10.3629

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV34828.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.6	4.7e-19	12	94	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA ++GF +r+ +s+ks+r+g+i++r + C + ++ +++ ++ r gC+ +l vk+e+ g+w+v k++ +HnH+l+ KZV34828.1 12 FYEEYAGRIGFLTRTLSSRKSERDGSIISRGLGCRGNRDVQSPSHD------MGQKRREGCTSMLIVKRESIGRWVVRKFVRDHNHPLV 94 ********************************877776666655......6778899**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-16	12	94	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MIFDSEDAAR TFYEEYAGRI GFLTRTLSSR KSERDGSIIS RGLGCRGNRD VQSPSHDMGQ 60 KRREGCTSML IVKRESIGRW VVRKFVRDHN HPLVISSPKK RPTFDEKDKT IQDLTAELRL 120 KKRLSAAYRD QLLALMRDVE NHNDSLTTQL QTIRSNLKEI DARRDDLPNH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV34828.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073902.1	3e-88	protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
Swissprot	Q9SZL8	1e-13	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2G9GDY9	3e-88	A0A2G9GDY9_9LAMI; Uncharacterized protein
STRING	Migut.N03107.1.p	3e-82	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13099	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-51	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]