PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV34945.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 260aa    MW: 29057.7 Da    PI: 6.6681
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV34945.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-171055147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W +eEd+ll ++vk++G+++W++I++ +  gR++k+c++rw + 
       KZV34945.1 10 KGSWNKEEDDLLRKLVKEHGPRNWSLISNGIS-GRSGKSCRLRWCNQ 55
                     799*****************************.***********985 PP
2Myb_DNA-binding56.65.8e-1864106347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++TteEd+ +++a++ +G++ W+tI+r ++ gRt++ +k++w++ 
       KZV34945.1  64 PFTTEEDDVILQAHAVHGNR-WATISRLLP-GRTDNAIKNHWNST 106
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.809160IPR017930Myb domain
SuperFamilySSF466892.13E-307103IPR009057Homeodomain-like
SMARTSM007173.4E-16958IPR001005SANT/Myb domain
PfamPF002494.0E-171055IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-231163IPR009057Homeodomain-like
CDDcd001674.57E-141254No hitNo description
PROSITE profilePS5129420.72361111IPR017930Myb domain
SMARTSM007171.5E-1461109IPR001005SANT/Myb domain
PfamPF002491.2E-1464106IPR001005SANT/Myb domain
CDDcd001674.60E-1164107No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2264110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MESAVVGKTK GSWNKEEDDL LRKLVKEHGP RNWSLISNGI SGRSGKSCRL RWCNQLSPVV  60
QHRPFTTEED DVILQAHAVH GNRWATISRL LPGRTDNAIK NHWNSTLRKK GGGWLAGEAA  120
AKQRRSWEEN GRGSSELGLK RQCSRVSPER SSCSGDVALE VEKMGLNGPD GLQASLDLSL  180
SPPGDGVMEL PCSEMNVIKK EEIEIVDKEQ EKKSTVEIED TCLETVMRRI IAQEVRNYFE  240
TMQAEDGLRF GPQCQSPDYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-37101104104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-37101104104C-Myb DNA-Binding Domain
1msf_C2e-37101104104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV34945.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830054.14e-89PREDICTED: transcription factor MYB44-like
TrEMBLA0A2Z7BS400.0A0A2Z7BS40_9LAMI; Myb-related protein B
STRINGMigut.F01484.1.p2e-88(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128831620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-52myb domain protein 73