PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV34988.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 162aa    MW: 18880.5 Da    PI: 9.7256
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV34988.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000332850123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C  C + F+++  L  H+++H
  KZV34988.1 28 YSCCFCRREFRSSQALGGHMNVH 50
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.6E-62554No hitNo description
PROSITE profilePS5015710.7412855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEHHTAPNYS MRNPSSFQEL VIWPPRFYSC CFCRREFRSS QALGGHMNVH RRDRAKLKQQ  60
HSPTPSPPDQ TSRLQKDSDY FRGLQMFPSF VSAGEHEMIP RPLFHARESF QETAVSCKRI  120
RKSDRNLPCL CRDLFANCKK ISGSMEDVDL ELRLGPNPPT RR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-112350229superman protein
2l1o_A5e-112350229Transcriptional regulator SUPERMAN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15058RRDRAKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV34988.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7BN181e-117A0A2Z7BN18_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.16e-22C2H2 family protein