PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV35139.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family LBD
Protein Properties Length: 195aa    MW: 21613.7 Da    PI: 5.7312
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV35139.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.15.3e-42271271101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrr+C+++C+lapyfp ++p kf  +h++FGasn++kll++lpe+ r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ l+++la++++
  KZV35139.1  27 PCAACKILRRRCVEKCILAPYFPPNDPIKFTTAHRVFGASNIIKLLQDLPEQLRADAVSSMVYEANARLRDPVYGCAGAICQLQKQINLLQEQLAKAQA 125
                 7************************************************************************************************99 PP

      DUF260 100 el 101
                 +l
  KZV35139.1 126 QL 127
                 85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.03926127IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-4227124IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEFSKSTPVA TYLPSPSPPL QSVIVTPCAA CKILRRRCVE KCILAPYFPP NDPIKFTTAH  60
RVFGASNIIK LLQDLPEQLR ADAVSSMVYE ANARLRDPVY GCAGAICQLQ KQINLLQEQL  120
AKAQAQLVNM HCQYTNLMAF ICMEMTQPIT GTISSSFDDQ QSFDNLNSYQ TNTSSIGLDE  180
NNNTNGNSLW ELLST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-422613210116LOB family transfactor Ramosa2.1
5ly0_B2e-422613210116LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV35139.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022875086.14e-83LOB domain-containing protein 1-like
SwissprotQ9LQR03e-63LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A2Z7BKX01e-143A0A2Z7BKX0_9LAMI; LOB domain-containing protein 11-like
STRINGMigut.N02625.1.p7e-78(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-56LOB domain-containing protein 1