PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV35874.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family LBD
Protein Properties Length: 370aa    MW: 41687.4 Da    PI: 6.0377
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV35874.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.96.9e-3844142199
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 aCaaCk++rrkCa+dC+lapyfp +++++f n+h+lFG+sn++k++++l++  +++am++++++++ara dPv G++++i++l+++++ ++ael+ + +
  KZV35874.1  44 ACAACKYQRRKCAADCILAPYFPYDRQRQFLNAHRLFGVSNIVKIVRHLEPPAKDQAMRTIIFQSDARAADPVGGCYRIIRDLEKRINMANAELDIVLH 142
                 7********************************************************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.20208.2E-43672IPR029057Phosphoribosyltransferase-like
PROSITE profilePS5089124.59443144IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-3544139IPR004883Lateral organ boundaries, LOB
Gene3DG3DSA:3.40.50.20208.2E-4294331IPR029057Phosphoribosyltransferase-like
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MQINQNYNTT IESNHEINNN NIPNQYANIP NTHHSRSHGS TTQACAACKY QRRKCAADCI  60
LAPYFPYDRQ RQFLNAHRLF GVSNIVKIVR HLEPPAKDQA MRTIIFQSDA RAADPVGGCY  120
RIIRDLEKRI NMANAELDIV LHHLALCRAA AAQQDHVVQV AGQPVDAGDC IINGDPLGSY  180
DEKWRADDQY VAEEEVAPRA AVDDFSSSWG FMHAHANGES TSSSFAYQDN DHVRKFPMDG  240
CNLDIKPILD NFSIGDDDDI DQREEMFKFD SNGTIIPRVS MTFRVVRTNQ YNQDLGLIHS  300
TNGNHLESPN EGSSIDHQVT IYLHAQNITM FPTNETRYFA SQILVSISGG LILILTAQST  360
RNMFRIHSDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-224515312118LOB family transfactor Ramosa2.1
5ly0_B2e-224515312118LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV35874.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072642.21e-99LOB domain-containing protein 7-like isoform X1
TrEMBLA0A2Z7BNG00.0A0A2Z7BNG0_9LAMI; LOB domain-containing protein 22-like
STRINGMigut.D00966.1.p2e-79(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-46LOB domain-containing protein 22