PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV35887.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 333aa    MW: 36154.8 Da    PI: 9.0759
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV35887.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.1e-081181027
                GGTS--TTTTT-SS-SSS CS
     zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                +rtG C yG++C+F+H++
  KZV35887.1  1 MRTGSCGYGAKCRFHHPR 18
                8***************96 PP
2zf-CCCH40.54.4e-133559327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                ++ C++++rtGtCk+G++CkF+H++
  KZV35887.1 35 EPACQYYLRTGTCKFGASCKFNHPK 59
                689********************96 PP
3zf-CCCH37.34.6e-1280105227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C++++++G+Ck+G++CkF H++
  KZV35887.1  80 GEKECSYYLKSGQCKFGATCKFDHPQ 105
                 7899********************97 PP
4zf-CCCH41.32.5e-13232258127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C++++rtG CkyG++C+++H+p
  KZV35887.1 232 PGQPNCNYYMRTGDCKYGSSCRYNHPP 258
                 5789*********************97 PP
5zf-CCCH308.8e-10279304227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++  C+f++++G+Ck+G +CkF H+p
  KZV35887.1 279 GMQACSFYLQNGHCKFGRTCKFDHPP 304
                 6778********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.746119IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-5118IPR000571Zinc finger, CCCH-type
SMARTSM0035653118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1593260IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-63259IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-103559IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-63560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-53858IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.38578106IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-578105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-580106IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-980105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-484104IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6231258IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554231259IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10233258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6235259IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5237257IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-6277304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53277305IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7279304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5279303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4282302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MRTGSCGYGA KCRFHHPRDR GSDFGVAEYP ERVGEPACQY YLRTGTCKFG ASCKFNHPKN  60
AGGSLNNVPL NIYGYPLRPG EKECSYYLKS GQCKFGATCK FDHPQPAGSA VPASVRPFYA  120
NVQSLSSVSP EQYNSSSTSY RVARPHLVPG SYVAGAYGPM LLHPGVVPIS NWNPYPGQLS  180
PTPSPGAQPS AGVTSMYGMS QLGSSAPAVT GAYSQLPSSS NIHKELQFPE RPGQPNCNYY  240
MRTGDCKYGS SCRYNHPPDW LISKTNCALS PMGLPLRPGM QACSFYLQNG HCKFGRTCKF  300
DHPPIVKYSS ASSYSEMPGT HAPYATVARY MQP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV35887.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833419.11e-164PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
RefseqXP_012833423.11e-164PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
SwissprotQ84W911e-137C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2Z7BUG70.0A0A2Z7BUG7_9LAMI; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGMigut.D00164.1.p1e-163(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-140C3H family protein