PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV36245.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family WRKY
Protein Properties Length: 621aa    MW: 68058.2 Da    PI: 5.7331
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV36245.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.2e-31271328260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 dDgynWrKYGqK+vk se+prsYY+Ct+a+C vkkkver++ d++++ei+Y+g Hnh+k
  KZV36245.1 271 DDGYNWRKYGQKNVKASEYPRSYYKCTHANCAVKKKVERTQ-DGQITEIIYKGAHNHSK 328
                 8***************************************9.***************85 PP
2WRKY101.26e-32439497159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Cts gC+v+k+ver+ +d k v++tYeg+Hnh+
  KZV36245.1 439 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCNVRKHVERACHDLKSVITTYEGKHNHD 497
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.227265329IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-28267329IPR003657WRKY domain
SuperFamilySSF1182904.71E-25268329IPR003657WRKY domain
SMARTSM007749.1E-35270328IPR003657WRKY domain
PfamPF031061.5E-24271326IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-36424499IPR003657WRKY domain
SuperFamilySSF1182904.58E-28431499IPR003657WRKY domain
PROSITE profilePS5081137.987434499IPR003657WRKY domain
SMARTSM007742.2E-36439498IPR003657WRKY domain
PfamPF031064.7E-24440497IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MGGFDDRVIM MEDWMLPSPS PRAFFSSRVG GDIAAEYTEC VNDSRIDLAP EVQDASGNAV  60
EKNGMLAFVV AEEGSNRNVL SEGKMSSSGG LMERITARTG FNALRLNTES IRPSEISTCA  120
EVPSPRLAIP LGLSPTILLD SPVFLSNPLV LPSPTTGKFA PSGSVQNSSV MRDNRGKGRE  180
KTFEDSSSFA FRSVAESNLF PDIKAVNDVN PSSLSPQPFP SVRDSSHLEN PALCQVYLSD  240
DENSPSFNEP QEYDGDHLSS GCLNADGGPS DDGYNWRKYG QKNVKASEYP RSYYKCTHAN  300
CAVKKKVERT QDGQITEIIY KGAHNHSKPP PDRRQDVLEA TSSVPLNQEC NYGTSGFQFK  360
NGTIFESGED VDASSTLLND NDEDDHATHI SASIGYDEGE ESESKRRRIE NYAQEMSGSA  420
RATREPRVVV QTTSDVDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTSLGC NVRKHVERAC  480
HDLKSVITTY EGKHNHDVPA ARNSSHVNSV QVSTAASSHI SKPELPQLQC STSHFERTLV  540
RSFGRQSGLQ PGSQPGYAFG TSHQAGLRNL GMAVLGPNQG KLSALPVHPY TGHQPLPVNS  600
TDMMLPKEEP NQLRDEVDFT F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-36271500878Probable WRKY transcription factor 4
2lex_A6e-36271500878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1404408KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV36245.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097672.10.0probable WRKY transcription factor 2 isoform X1
SwissprotQ9FG771e-142WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2Z7BW090.0A0A2Z7BW09_9LAMI; Putative WRKY transcription factor 2-like
STRINGPGSC0003DMT4000569520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-139WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]