PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV36246.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

GRAS

Protein Properties

Length: 413aa MW: 46612 Da PI: 7.2982

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV36246.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	405.6	4.9e-124	33	412	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..........sseelaalkl...fse 86 +++lL++cAe vs +dl++a++l++ ls++++p+gd+++Rl++ ft+AL+ rl+r+ s + ps+ +++ s +e+ +++ +++ KZV36246.1 33 MRQLLISCAELVSRSDLSAAHRLISILSTNSTPYGDSTERLVHQFTKALSIRLNRHASAANFFMVPSSVATSVptlagssssaSNDEALVHSSylsLNQ 131 589**************************************************77766666655555544456666544442232222222567* PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185 v+P+++fs+ltaNqaIlea+ g++++Hi+Dfdi++G+QWp+L+qa a+R ++p+lRiT+ gs + e l++tg+rLakfA++lg++f+f++l++ + KZV36246.1 132 VTPFVRFSQLTANQAILEAIRGQQAIHILDFDIMHGVQWPPLMQAVAER-FPTPTLRITATGS----DLEILRRTGDRLAKFAHSLGLRFQFHPLIVLT 225 **********************************************9.789******....9**********************96654 PP GRAS 186 ledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 ed +++ + p+EalaVn+++ lhrll+++ s++ +L+ +k ++P v++v+e+ea+hn++ F +rf+eal++y+a+f+slea+lp++s+er KZV36246.1 226 NEDPisATSSVLILPDEALAVNCMHYLHRLLKNRDSVRL----FLHRIKAMNPIVFTVAEREANHNHPFFQQRFVEALDHYAAVFESLEATLPPNSRER 320 443223678888999************66666655....**************************************************** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 ++vE+ ++g+ei+++va+eg++rrerhe++++W+ +l+++GF +vpls +a++qaklllr ++ s+gy+++ ++sl+lgW+++pL+svS+W KZV36246.1 321 QSVEQIWFGKEITDIVAAEGEHRRERHERFRSWEVMLRSSGFLNVPLSPFAVSQAKLLLRLHYpSEGYQLHILNDSLFLGWQNQPLFSVSSW 412 ****************************************************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.806	7	392	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-121	33	412	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010014	Biological Process	meristem initiation
GO:0010223	Biological Process	secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MLGSFSSSSH DEVEDPPPNV YHHRSLVSPP IHMRQLLISC AELVSRSDLS AAHRLISILS 60 TNSTPYGDST ERLVHQFTKA LSIRLNRHAS AANFFMVPSS VATSVPTLAG SSSSASNDEA 120 LVHSSYLSLN QVTPFVRFSQ LTANQAILEA IRGQQAIHIL DFDIMHGVQW PPLMQAVAER 180 FPTPTLRITA TGSDLEILRR TGDRLAKFAH SLGLRFQFHP LIVLTNEDPI SATSSVLILP 240 DEALAVNCMH YLHRLLKNRD SVRLFLHRIK AMNPIVFTVA EREANHNHPF FQQRFVEALD 300 HYAAVFESLE ATLPPNSRER QSVEQIWFGK EITDIVAAEG EHRRERHERF RSWEVMLRSS 360 GFLNVPLSPF AVSQAKLLLR LHYPSEGYQL HILNDSLFLG WQNQPLFSVS SWH

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MLGSFSSSSH DEVEDPPPNV YHHRSLVSPP IHMRQLLISC AELVSRSDLS AAHRLISILS  60
TNSTPYGDST ERLVHQFTKA LSIRLNRHAS AANFFMVPSS VATSVPTLAG SSSSASNDEA  120
LVHSSYLSLN QVTPFVRFSQ LTANQAILEA IRGQQAIHIL DFDIMHGVQW PPLMQAVAER  180
FPTPTLRITA TGSDLEILRR TGDRLAKFAH SLGLRFQFHP LIVLTNEDPI SATSSVLILP  240
DEALAVNCMH YLHRLLKNRD SVRLFLHRIK AMNPIVFTVA EREANHNHPF FQQRFVEALD  300
HYAAVFESLE ATLPPNSRER QSVEQIWFGK EITDIVAAEG EHRRERHERF RSWEVMLRSS  360
GFLNVPLSPF AVSQAKLLLR LHYPSEGYQL HILNDSLFLG WQNQPLFSVS SWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-63	40	412	26	378	Protein SCARECROW
5b3h_A	6e-63	40	412	25	377	Protein SCARECROW
5b3h_D	6e-63	40	412	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV36246.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022878688.1	0.0	scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-133	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A2Z7BPN5	0.0	A0A2Z7BPN5_9LAMI; Scarecrow-like protein 18-like
STRING	XP_009765072.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11298	22	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-126	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]