PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV36397.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 198aa    MW: 22379.2 Da    PI: 7.9466
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV36397.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.5e-181971557
                SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                 +++++q++ Le+ F  +++++ e++ +LA++lg++ rq+ +W+qN+Ra++k+
  KZV36397.1 19 KRLNQDQVQLLESSFDASKKLDPERKFQLARQLGVPPRQIAIWYQNKRARWKN 71
                5789***********************************************95 PP
2HD-ZIP_I/II105.73.5e-3418108393
  HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  k+rl+++qv+lLE+sF++++kL+perK +lar+Lg+ prq+a+W+qn+RAR+k++ lE dy+aL  +++a  +e+++Lek+v  Lr elk+
   KZV36397.1  18 KKRLNQDQVQLLESSFDASKKLDPERKFQLARQLGVPPRQIAIWYQNKRARWKNQSLELDYSALEVRLEAALSEKKHLEKQVCGLRGELKR 108
                  99************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.1631272IPR001356Homeobox domain
SuperFamilySSF466895.13E-181380IPR009057Homeodomain-like
SMARTSM003894.0E-161476IPR001356Homeobox domain
PfamPF000462.6E-151871IPR001356Homeobox domain
CDDcd000863.20E-141873No hitNo description
Gene3DG3DSA:1.10.10.605.4E-192079IPR009057Homeodomain-like
PROSITE patternPS0002704770IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MSLSTSEVPK NNSSKHVKKR LNQDQVQLLE SSFDASKKLD PERKFQLARQ LGVPPRQIAI  60
WYQNKRARWK NQSLELDYSA LEVRLEAALS EKKHLEKQVC GLRGELKRAQ EMLSAASRLA  120
QAEVQPQVEK AWIPPLSSLS SCCDEGGGSS SLNDDVFWSG NWAAAGDQAD LQYEQLYACL  180
MVNGKGSNEW NHQKDFWV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV36397.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012848848.18e-74PREDICTED: homeobox-leucine zipper protein ATHB-52
TrEMBLA0A2Z7BVW71e-142A0A2Z7BVW7_9LAMI; Homeobox-leucine zipper protein ATHB-52-like
STRINGMigut.M00776.1.p8e-72(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27152453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.19e-33homeobox protein 52