PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV36402.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 225aa    MW: 23424.5 Da    PI: 9.1601
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV36402.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.92.3e-102954227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                kt++C+++     Ck+Gd+C+FaHg+
  KZV36402.1 29 KTKICNRYNTAEGCKFGDSCNFAHGE 54
                89**********************96 PP
2zf-CCCH34.53.5e-11192216126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC +f + G C +GdrC+FaHg
  KZV36402.1 192 FKTKLCENFTK-GSCTFGDRCHFAHG 216
                 69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.27E-82658IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-132758IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6952755IPR000571Zinc finger, CCCH-type
SMARTSM003560.00122754IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-72954IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.103.1E-1795165IPR004088K Homology domain, type 1
SMARTSM003226.5E-1396166IPR004087K Homology domain
PROSITE profilePS5008415.05397161IPR004088K Homology domain, type 1
SuperFamilySSF547911.1E-1598171IPR004088K Homology domain, type 1
PfamPF000131.7E-1299163IPR004088K Homology domain, type 1
CDDcd001055.40E-1599161No hitNo description
Gene3DG3DSA:4.10.1000.104.1E-16189222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549191218IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8191221IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-7191217IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-9192216IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MMNLAPPPAT RALTGAPPTQ NGSAPAAIKT KICNRYNTAE GCKFGDSCNF AHGEWELGRP  60
INSSQEDDPR ALGVIPGRYS ARMEPPVPGP TAGFGVSATA KISVNASLVG AIIGKGGMNS  120
KQICRQTGAK LAIREHDTDP NLRNIELEGT FEQIQRASAM VRELIVTVGS SNGSVKAVGG  180
PGASAPGPGS NFKTKLCENF TKGSCTFGDR CHFAHGSAEL RKTGL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV36402.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078827.11e-116zinc finger CCCH domain-containing protein 14-like
SwissprotQ69XQ31e-78C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A2Z7BP311e-164A0A2Z7BP31_9LAMI; Zinc finger CCCH domain-containing protein 14
STRINGXP_009767111.11e-110(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-59C3H family protein