PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV36458.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family LBD
Protein Properties Length: 281aa    MW: 31791.1 Da    PI: 6.1599
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV36458.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.41.2e-43731721100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +Ca+Ck+lrr+C+kdCv+apyfp ++p+kfa+vhk+FGasnv+k+l+++p ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+++++l+ +la++++
  KZV36458.1  73 PCASCKLLRRRCSKDCVFAPYFPPDEPHKFAMVHKVFGASNVSKMLQEVPVHQRADAVSSLVYEANARMRDPVYGCVGAISYLQNEISRLQMQLAVAEA 171
                 7*********************************************************************************************99887 PP

      DUF260 100 e 100
                 e
  KZV36458.1 172 E 172
                 5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.33272173IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-4373170IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSLEDFINNS IPLLVTRDIP EDQTWQYYIT GDPSQHTATR SLKQFGARGL TSRAKTSRSR  60
DNSPIRFEMG GGPCASCKLL RRRCSKDCVF APYFPPDEPH KFAMVHKVFG ASNVSKMLQE  120
VPVHQRADAV SSLVYEANAR MRDPVYGCVG AISYLQNEIS RLQMQLAVAE AEVLVCMDQM  180
QMPQPQSDHE KCLLSASSDN VSLCDFQNYR SFNNHHTIQD PLKRESIWYQ TLASPPPSFT  240
VALGCCRDVE ETRFVVEETQ QAWGKLTSIE IKMFEVPPEL D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-48711749112LOB family transfactor Ramosa2.1
5ly0_B8e-48711749112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV36458.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023728886.14e-75LOB domain-containing protein 12-like
RefseqXP_024981725.13e-75LOB domain-containing protein 12
TrEMBLA0A2Z7BS460.0A0A2Z7BS46_9LAMI; LOB domain-containing protein 12
STRINGVIT_06s0004g07200.t013e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-66LBD family protein